RetrogeneDB ID: | retro_ogar_2138 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873595.1:6845994..6847245(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAICS | ||
Ensembl ID: | ENSOGAG00000003575 | ||
Aliases: | None | ||
Description: | phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:HGNC Symbol;Acc:8587] |
Percent Identity: | 85.92 % |
Parental protein coverage: | 99.3 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | VLNIGKKLYEGKTKE-VYELLDSPGKVLLQSKDQITAGNAARKNQLEGKAAISNKITCCIFQLLQEAGIK |
VLNI.KKLYEG.....VYELLDSPGK.LLQ.KDQITAG.AA.KN.LEG.AAISNKITCCIFQL.QEAG.K | |
Retrocopy | VLNIDKKLYEGXXXX>VYELLDSPGKALLQFKDQITAGDAAKKNLLEGEAAISNKITCCIFQL*QEAG-K |
Parental | TAFSKKYGETAFVAPQCEMIPIEWVCRRIATGSFLKRNPGVKEGYKFYPPKVEMFF-KDDANNDPQWSEE |
TAFSKKYGETAF.APQCE.I.IEWVCR.IATGSFLKRNPGVKEGYKFYPPKVEMFF.KDDANNDPQWSEE | |
Retrocopy | TAFSKKYGETAFIAPQCEIIRIEWVCR-IATGSFLKRNPGVKEGYKFYPPKVEMFF>KDDANNDPQWSEE |
Parental | QLIAAKFCFAGLVIGQTEVD-IMSHATQAIFEILEKSWSPQNCTLVDMKIEFGVDVTTKEIVLADVIDND |
QLIAAKFCFAGLVIGQTEV..IMSHATQAIFEILEKSWSPQNCTLVDMKIEFGV.V.TKEIVLADVIDND | |
Retrocopy | QLIAAKFCFAGLVIGQTEVE>IMSHATQAIFEILEKSWSPQNCTLVDMKIEFGVNVITKEIVLADVIDND |
Parental | SWRLWPSGDRSQQKDKQCYRDLKEVTPEGLQMVKKNFEWVAERVEFLLTPESQCRVVVLMGSTSDLGHCE |
SWRLWPSGD.SQQKDKQCYRDLKEVTPEG.....K.........E.LLTPESQCRVVVLMGSTSDL..C. | |
Retrocopy | SWRLWPSGDQSQQKDKQCYRDLKEVTPEGSK*GRKTLSGLQK--ECLLTPESQCRVVVLMGSTSDLAPCK |
Parental | KIKKACGSFGIPCELRITSAHKGPDETLRIKSEYEGDGIPTVFVAVAGRSNGLGPVLSGNTAYPVINCPP |
K.KK.CGSFG..C..RITSAHKGPDETLRIKSEYEGDGIPTVFVAVAGRSNGLGP.LS.NTAYPVINC.P | |
Retrocopy | KTKKPCGSFGTSCKCRITSAHKGPDETLRIKSEYEGDGIPTVFVAVAGRSNGLGPLLSRNTAYPVINCTP |
Parental | LTMDWGAQDVWSSLRLPSESIGLGCSTILSPEGSAQFAAQIFGLNNHLVWCKLRASILNTWISLKLADKK |
LTMD.GAQDVWSSL.LPS...GLGCSTI.SPEGSAQFAAQIFG.NNHLVWCKLRA.ILNTWIS.KLADKK | |
Retrocopy | LTMD*GAQDVWSSLQLPS---GLGCSTIFSPEGSAQFAAQIFGSNNHLVWCKLRACILNTWISFKLADKK |
Parental | VREHDL |
VREHDL | |
Retrocopy | VREHDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000010577 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010749 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013413 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015242 | 2 retrocopies | |
Homo sapiens | ENSG00000128050 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000024392 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029247 | 6 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008786 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003575 | 2 retrocopies |
retro_ogar_2138 , retro_ogar_865,
|
Procavia capensis | ENSPCAG00000008531 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016081 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000002101 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000006751 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010497 | 2 retrocopies | |
Drosophila melanogaster | FBgn0020513 | 1 retrocopy |