RetrogeneDB ID: | retro_dnov_1408 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_19785:45331..45807(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSDNOG00000008412 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 72.05 % |
Parental protein coverage: | 96.97 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | PPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQI |
P.KF.P..IKV.YL..T.GEV.ATSALAPK.GPLGLSPKKV..D.AK..GDWKGLRI.VKLT.QNR.AQ. | |
Retrocopy | PFKFHPTDIKVMYLWYTRGEVSATSALAPKSGPLGLSPKKVDEDTAKGIGDWKGLRISVKLTLQNREAQM |
Parental | EVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVSIARQMRHRSLARELSGTIKEIL-GTAQSVG |
E.V.SASALIIKAL.E..R..K......HSGNITF.E.V.IARQM.H.SLARELSGT.K.IL.GTAQSVG | |
Retrocopy | EGVSSASALIIKALRE*SRE-KEGNRTQHSGNITFVEAVNIARQMWH*SLARELSGTLK*IL<GTAQSVG |
Parental | CNVDGRHPHDIIDDINSGAVE |
C.VDG.HPHDI.DDI..GAVE | |
Retrocopy | CHVDGCHPHDIRDDISRGAVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 1076 .57 RPM |
SRP012922_cerebellum | 0 .00 RPM | 317 .55 RPM |
SRP012922_heart | 0 .00 RPM | 351 .06 RPM |
SRP012922_kidney | 0 .00 RPM | 857 .53 RPM |
SRP012922_liver | 0 .00 RPM | 424 .48 RPM |
SRP012922_lung | 0 .00 RPM | 1040 .36 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 624 .14 RPM |
SRP012922_spleen | 0 .00 RPM | 1918 .94 RPM |