RetrogeneDB ID: | retro_dnov_368 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_4095:272203..272682(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSDNOG00000008412 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 74.1 % |
Parental protein coverage: | 98.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | PKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKK-VGDDIAKATGDWKGLRITVKLTIQNRQAQI |
PKFDPNE.KVVYLRC..GEV.ATSALAPKI.PLG.SPKK.VGD.IAK.T.DWKGLRI.V.LT.Q.RQAQ. | |
Retrocopy | PKFDPNETKVVYLRC--GEVSATSALAPKISPLGVSPKK<VGDNIAKKTSDWKGLRIRVTLTVQSRQAQM |
Parental | EVVPSASALIIKALKEPPRDRKKQ-KNIKHSGNITFDEIVSIARQMRHRSLARELSGTIKEILGTAQSV- |
.VV.SASAL.I....E.PR.RKKQ.KNIKHSGN.T.D.IV..A.QM.H.SLARELS.TIKEILGTA.SV. | |
Retrocopy | QVVLSASALLITTFQEQPRHRKKQ>KNIKHSGNNTLDGIVNNA-QMWHQSLARELSRTIKEILGTACSV< |
Parental | GCNVDGRHPHDIIDDINSGAVECPAS |
GCN.DG.H.H..IDDIN.GAVE.PAS | |
Retrocopy | GCNADGCHCHAVIDDINRGAVEGPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 1076 .57 RPM |
SRP012922_cerebellum | 0 .00 RPM | 317 .55 RPM |
SRP012922_heart | 0 .00 RPM | 351 .06 RPM |
SRP012922_kidney | 0 .00 RPM | 857 .53 RPM |
SRP012922_liver | 0 .00 RPM | 424 .48 RPM |
SRP012922_lung | 0 .00 RPM | 1040 .36 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 624 .14 RPM |
SRP012922_spleen | 0 .00 RPM | 1918 .94 RPM |