Parental gene:

ENSMODG00000004571

Aliases:None
Description:None
Organism:Opossum (Monodelphis domestica)
Coordinates:1:452986335..452993410(-)


>ENSMODG00000004571
ATGCCGCCCAAGTTTGACCCTAATGAAATTAAAGTCGTGTTTTTAAGGTGTACTGGTGGTGAAGTTGGTGCCACATCTGC
CCTGGCCCCCAAAATTGGTCCCTTGGGTTTGTCTCCAAAAAAGGTTGGTGATGACATTGCCAAGGCAACTGGTGACTGGA
AAGGGCTAAGGATCACAGTGAAACTTACCATTCAGAATAGACAGGCCCAGATTGAGGTAGTGCCTTCTGCCTCAGCCCTG
ATCATCAAAGCCCTAAAAGAACCACCTCGGGACAGAAAGAAGCAGAAAAATATTAAACACAATGGAAACATCAGTCTTGA
TGAAATCATCAACATTGCCCGACAGATGAGACACCGATCCCTGGCAAGAGACCTCTCTGGAACCATTAAAGAGATACTTG
GAACAGCTCAATCTGTGGGCTGTAATATTGATGGCAGACATCCTCATGATGTCATTGATGACATCAATAGTGGGGCTGTG
GAATGCCCAGCTAGTTAA

Library Parental gene expression (RPM)
SRP007412_brain 499 .55 RPM
SRP007412_cerebellum 537 .67 RPM
SRP007412_heart 950 .51 RPM
SRP007412_kidney 2993 .16 RPM
SRP007412_liver 2286 .85 RPM
SRP007412_testis 487 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016712 possible_ortholog 15 retrogenes
Bos taurus ENSBTAG00000006963 possible_ortholog 3 retrogenes
Canis familiaris ENSCAFG00000020136 possible_ortholog 31 retrogenes
Choloepus hoffmanni ENSCHOG00000006732 possible_ortholog 32 retrogenes
Callithrix jacchus ENSCJAG00000018082 possible_ortholog 1 retrogene
Cavia porcellus ENSCPOG00000013769 possible_ortholog 18 retrogenes
Dasypus novemcinctus ENSDNOG00000008412 possible_ortholog 48 retrogenes
Equus caballus ENSECAG00000010622 possible_ortholog 17 retrogenes
Echinops telfairi ENSETEG00000006941 possible_ortholog 7 retrogenes
Felis catus ENSFCAG00000010302 possible_ortholog 31 retrogenes
Homo sapiens ENSG00000197958 possible_ortholog 41 retrogenes
Gorilla gorilla ENSGGOG00000000648 possible_ortholog 34 retrogenes
Latimeria chalumnae ENSLACG00000015373 ortholog_one2many 3 retrogenes
Loxodonta africana ENSLAFG00000017669 possible_ortholog 10 retrogenes
Macropus eugenii ENSMEUG00000007380 ortholog_one2one 12 retrogenes
Myotis lucifugus ENSMLUG00000009551 possible_ortholog 2 retrogenes
Myotis lucifugus ENSMLUG00000013404 possible_ortholog 1 retrogene
Macaca mulatta ENSMMUG00000000422 possible_ortholog 2 retrogenes
Mustela putorius furo ENSMPUG00000013832 possible_ortholog 34 retrogenes
Mus musculus ENSMUSG00000038900 possible_ortholog 1 retrogene
Oryctolagus cuniculus ENSOCUG00000004902 possible_ortholog 9 retrogenes
Otolemur garnettii ENSOGAG00000000597 possible_ortholog 120 retrogenes
retro_ogar_1002, retro_ogar_1010, retro_ogar_1049, retro_ogar_1069, retro_ogar_1106, retro_ogar_1117, retro_ogar_1137, retro_ogar_1140, retro_ogar_1181, retro_ogar_1188, retro_ogar_1189, retro_ogar_1192, retro_ogar_1230, retro_ogar_1247, retro_ogar_1263, retro_ogar_1295, retro_ogar_1331, retro_ogar_1341, retro_ogar_1408, retro_ogar_1409, retro_ogar_1427, retro_ogar_1457, retro_ogar_1464, retro_ogar_1489, retro_ogar_1503, retro_ogar_1534, retro_ogar_1536, retro_ogar_1550, retro_ogar_1569, retro_ogar_1570, retro_ogar_1579, retro_ogar_1606, retro_ogar_1621, retro_ogar_1709, retro_ogar_1717, retro_ogar_1739, retro_ogar_1789, retro_ogar_1803, retro_ogar_1810, retro_ogar_1825, retro_ogar_1836, retro_ogar_1881, retro_ogar_1885, retro_ogar_1916, retro_ogar_1923, retro_ogar_1937, retro_ogar_1941, retro_ogar_1948, retro_ogar_1969, retro_ogar_1975, retro_ogar_1987, retro_ogar_2055, retro_ogar_2115, retro_ogar_2134, retro_ogar_2172, retro_ogar_2179, retro_ogar_2180, retro_ogar_2208, retro_ogar_2209, retro_ogar_2230, retro_ogar_2291, retro_ogar_2323, retro_ogar_2387, retro_ogar_2483, retro_ogar_2495, retro_ogar_2511, retro_ogar_2570, retro_ogar_2620, retro_ogar_2622, retro_ogar_2624, retro_ogar_2749, retro_ogar_2768, retro_ogar_2809, retro_ogar_2904, retro_ogar_2935, retro_ogar_2945, retro_ogar_2953, retro_ogar_2980, retro_ogar_3004, retro_ogar_3017, retro_ogar_303, retro_ogar_3035, retro_ogar_3128, retro_ogar_3135, retro_ogar_3164, retro_ogar_3394, retro_ogar_3489, retro_ogar_395, retro_ogar_398, retro_ogar_412, retro_ogar_427, retro_ogar_452, retro_ogar_480, retro_ogar_512, retro_ogar_513, retro_ogar_538, retro_ogar_560, retro_ogar_587, retro_ogar_624, retro_ogar_636, retro_ogar_653, retro_ogar_655, retro_ogar_667, retro_ogar_668, retro_ogar_669, retro_ogar_683, retro_ogar_700, retro_ogar_734, retro_ogar_737, retro_ogar_744, retro_ogar_747, retro_ogar_775, retro_ogar_818, retro_ogar_853, retro_ogar_868, retro_ogar_901, retro_ogar_927, retro_ogar_956, retro_ogar_962, retro_ogar_964,
Ochotona princeps ENSOPRG00000011078 possible_ortholog 21 retrogenes
Procavia capensis ENSPCAG00000007469 possible_ortholog 3 retrogenes
Pongo abelii ENSPPYG00000019622 possible_ortholog 44 retrogenes
Pan troglodytes ENSPTRG00000022808 possible_ortholog 1 retrogene
Pteropus vampyrus ENSPVAG00000000925 possible_ortholog 15 retrogenes
Rattus norvegicus ENSRNOG00000016220 possible_ortholog 4 retrogenes
Sarcophilus harrisii ENSSHAG00000017864 ortholog_one2one 8 retrogenes
Sus scrofa ENSSSCG00000005612 possible_ortholog 14 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000027425 possible_ortholog 7 retrogenes
Tupaia belangeri ENSTBEG00000006304 possible_ortholog 25 retrogenes
Tursiops truncatus ENSTTRG00000015700 possible_ortholog 15 retrogenes
Vicugna pacos ENSVPAG00000005123 possible_ortholog 27 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_309 71.71 90.91
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2. retro_mdom_925 53.57 50.91
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3. retro_mdom_1061 83.23 100.00
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4. retro_mdom_1177 52.13 56.36
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5. retro_mdom_1192 72.04 56.36
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6. retro_mdom_1526 52.81 53.94
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7. retro_mdom_1719 78.66 97.58
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8. retro_mdom_1871 70.79 53.94
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9. retro_mdom_1947 53.77 64.24
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Download FASTA sequences of all ENSMODG00000004571 retrocopies