RetrogeneDB ID: | retro_dord_672 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_508:28195..28889(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cnn2 | ||
Ensembl ID: | ENSDORG00000001141 | ||
Aliases: | None | ||
Description: | calponin 2 [Source:MGI Symbol;Acc:MGI:105093] |
Percent Identity: | 93.16 % |
Parental protein coverage: | 75.57 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSSTQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIGPDFQKGLKDGVILCTLMNKLQPG |
MSSTQFNKGPSYGL.AEVKNRLLSKYDPQKEAELRSWIEGLTGLSIGPDFQKGLKDGVILCTLMNKLQPG | |
Retrocopy | MSSTQFNKGPSYGL*AEVKNRLLSKYDPQKEAELRSWIEGLTGLSIGPDFQKGLKDGVILCTLMNKLQPG |
Parental | SVSKINRSMQNWHQLE-NLSNFIK-AMVNYGMNPVDLFEANDLFESGNMTQVQVSLLALAGKAKTKGLQS |
S.SKINRSMQNWHQLE.NLSNF...AMV.YGMNPVD..EANDL.ESGNMTQVQVSLLALAGKAKTKGLQ. | |
Retrocopy | SASKINRSMQNWHQLE<NLSNFVR<AMVSYGMNPVDMCEANDLLESGNMTQVQVSLLALAGKAKTKGLQR |
Parental | GVDIGVKYSEKQQRNFDDATMKAGQCVIGLQMGTNKCASQSGMTAYGTRRHLYDPKNHILPPMDHSTISL |
GVDIGVKYSEKQQRNFDDATMKAGQCVIGLQMGT.KCASQSGMTAYGTRRHLYDPKNHILPPMDHSTISL | |
Retrocopy | GVDIGVKYSEKQQRNFDDATMKAGQCVIGLQMGTHKCASQSGMTAYGTRRHLYDPKNHILPPMDHSTISL |
Parental | QMGTNKCASQVGMTAPGTRRHIYD |
QMGTN.CASQVG.TAPGT.RHIY. | |
Retrocopy | QMGTNNCASQVGRTAPGTQRHIYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000001141 | 1 retrocopy |
retro_dord_672 ,
|
Erinaceus europaeus | ENSEEUG00000015171 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000028153 | 9 retrocopies | |
Macaca mulatta | ENSMMUG00000015306 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001161 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000010144 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000009302 | 12 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000028367 | 1 retrocopy |