RetrogeneDB ID: | retro_mmul_1131 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:131868681..131869214(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000001709 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMMUG00000015306 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.56 % |
Parental protein coverage: | 99.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | QAKTKGLQSGVDIGVKYSEKQERNF-DDATMKAGQCVIGLQMGTNKCASQSGMTAYGTRRHLYDPKN-HI |
.AKTKGLQSG.D.G.KYSEKQE....DDATMKAGQCVIGLQMGT.KC.SQSGMTAYG.RRHLY.P...H. | |
Retrocopy | KAKTKGLQSGADSGDKYSEKQEWDL<DDATMKAGQCVIGLQMGTLKCTSQSGMTAYGDRRHLYGPQEPHP |
Parental | LPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNSSMSLQMGYTQGANQSGQVFGLGRQ |
.PP.DHSTISLQMG.N...SQVG..APGTRRH.YDTKLGTDKCDNSSMS.Q.GYTQ.ANQS.QVFGLGRQ | |
Retrocopy | CPPTDHSTISLQMGEN--TSQVGTMAPGTRRHLYDTKLGTDKCDNSSMSPQTGYTQDANQSCQVFGLGRQ |
Parental | IYDPKYCPQGTVADGAPSGAGDCPDPGEVPEYPPYYQEEAG |
.Y.PKYCPQGTVADGAPSGAGDCP.PGE.PEY.PYY.E..G | |
Retrocopy | TYNPKYCPQGTVADGAPSGAGDCPGPGEAPEYSPYY*EDTG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 1 .23 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .79 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .03 RPM |
SRP007412_heart | 0 .12 RPM | 6 .65 RPM |
SRP007412_kidney | 0 .94 RPM | 13 .15 RPM |
SRP007412_liver | 0 .08 RPM | 8 .99 RPM |
SRP007412_testis | 0 .11 RPM | 8 .25 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_943 |
Pan troglodytes | retro_ptro_653 |
Gorilla gorilla | retro_ggor_762 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020764 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000001141 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015171 | 1 retrocopy | |
Homo sapiens | ENSG00000064666 | 16 retrocopies | |
Gorilla gorilla | ENSGGOG00000028153 | 9 retrocopies | |
Myotis lucifugus | ENSMLUG00000013160 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000001690 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004705 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015306 | 1 retrocopy |
retro_mmul_1131 ,
|
Mus musculus | ENSMUSG00000004665 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001161 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000010144 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000009302 | 12 retrocopies | |
Pteropus vampyrus | ENSPVAG00000016570 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000028367 | 1 retrocopy |