RetrogeneDB ID:

retro_ggor_1199

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:15:37102365..37103293(-)
Located in intron of:ENSGGOG00000007661
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CNN2
Ensembl ID:ENSGGOG00000028153
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1199
ATGAGTTCCACGCAGTTCAACAAGGGCCTCTAGTATGGGCTGTCAGCCGAGGTCAAGAACTGGCTCCTGCCCAAATATGA
CCCCCAGAAGGAGGCAGAGCTCTGCAGCTGGATCAAGGGACTCACCGGCATCTCCATTGACCCTAACTTCCAGAAGAGCC
TGAAGGATGGGATTATCTTATGCATACTCATGAACAAGCTGCAGCCGGCCTCAGTCCCCAAGATCAACCACTCCATGCAG
AAGTGGCACCAGCTGGAAAACCTCTCCAACTTCATCAAGGCTATAGTCAGCTATGACATGAACCCCATGGACCTGTTCGA
GGCCAACAACCTGTTTGAGAGTGGGAACATGAGGCACATGCAGGTGTCTCTTTTTGCCCTAGCAGGGAAGGTCAAGACTA
AGAAGCCGCAGAGCGGGGTGGACATTGGCATCAAGTACTCAGAGAAGCAGGAGCAGAACTTCAGTGACGCCGCCATGAAG
GCCGGCTAGTGCGTCATCGGGCTGCAAATGGGCACCAACAAATGTGCCAGCCAGTTGGGCATGACCGTGTATGGCGTGAG
GAGGCATCTCTGTGACCCCAAGAATCACATCCTGCCCCGCCATGGACCACTCGACCATTAGCCTCCAGATGGGTACAAAT
AAGTGTGCCAGCCAGGTGAGCATGACAGCTCCTGGGACGCAGCAGCACATCTATGACACCAAGCTGGGAACTGACAAGTG
CGAAAATTCCTCCATGTCCCTGCAGATGGGCTACACCCAGGGTACCAACCATAGTAGCCAGGTCTTTGGCCTGGGCCAGC
ATATATGTGACCCCAAGTACTGCCTGCCAGGCACAGTGGCCGATGGGGCTCCCTTGGGTGCTGGCAACTGCCTGGGCCCA
GGAGAGGTCCCTGAATATCCCCCTTACTACCAGGAGGAGGCTGGCTAC

ORF - retro_ggor_1199 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.94 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMSSTQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRTWIEGLTGLSIGPDFQKGLKDGTILCTLMNKLQPG
MSSTQFNKG..YGLSAEVKN.LL.KYDPQKEAEL..WI.GLTG.SI.P.FQK.LKDG.ILC.LMNKLQP.
RetrocopyMSSTQFNKGL*YGLSAEVKNWLLPKYDPQKEAELCSWIKGLTGISIDPNFQKSLKDGIILCILMNKLQPA
ParentalSIPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVSLLALAGKAKTKGLQSGV
S.PKIN.SMQ.WHQLENLSNFIKA.VSY.MNP.DLFEAN.LFESGNM...QVSL.ALAGK.KTK..QSGV
RetrocopySVPKINHSMQKWHQLENLSNFIKAIVSYDMNPMDLFEANNLFESGNMRHMQVSLFALAGKVKTKKPQSGV
ParentalDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTNKCASQSGMTAYGTRRHLYDPKNHIL-PPMDHSTISLQ
DIG.KYSEKQE.NF.DA.MKAG.CVIGLQMGTNKCASQ.GMT.YG.RRHL.DPKNHIL.P.MDHSTISLQ
RetrocopyDIGIKYSEKQEQNFSDAAMKAG*CVIGLQMGTNKCASQLGMTVYGVRRHLCDPKNHIL>PAMDHSTISLQ
ParentalMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNSSMSLQMGYTQGANQSGQVFGLGRQIYDPKYCPQGTV
MGTNKCASQV.MTAPGT..HIYDTKLGTDKC.NSSMSLQMGYTQG.N.S.QVFGLG..I.DPKYC..GTV
RetrocopyMGTNKCASQVSMTAPGTQQHIYDTKLGTDKCENSSMSLQMGYTQGTNHSSQVFGLGQHICDPKYCLPGTV
ParentalADGAPSGTGDCPDPGEVPEYPPYYQEEAGY
ADGAP.G.G.C..PGEVPEYPPYYQEEAGY
RetrocopyADGAPLGAGNCLGPGEVPEYPPYYQEEAGY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 7 .82 RPM
SRP007412_cerebellum 0 .00 RPM 5 .12 RPM
SRP007412_heart 0 .00 RPM 32 .30 RPM
SRP007412_kidney 0 .04 RPM 44 .49 RPM
SRP007412_liver 0 .00 RPM 54 .07 RPM
SRP007412_testis 0 .00 RPM 10 .26 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1199 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1199 has 3 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_1575
Pan troglodytes retro_ptro_1061
Pongo abelii retro_pabe_1299

Parental genes homology:
Parental genes homology involve 13 parental genes, and 53 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000207641 retrocopy
Dipodomys ordii ENSDORG000000011411 retrocopy
Erinaceus europaeus ENSEEUG000000151711 retrocopy
Homo sapiens ENSG0000006466616 retrocopies
Gorilla gorilla ENSGGOG000000138701 retrocopy
Gorilla gorilla ENSGGOG00000028153 9 retrocopies
Myotis lucifugus ENSMLUG000000131604 retrocopies
Macaca mulatta ENSMMUG000000153061 retrocopy
Mus musculus ENSMUSG000000046652 retrocopies
Nomascus leucogenys ENSNLEG000000011612 retrocopies
Otolemur garnettii ENSOGAG000000101442 retrocopies
Pongo abelii ENSPPYG0000000930212 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000283671 retrocopy



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