RetrogeneDB ID:

retro_ggor_2370

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:6:110980856..110981536(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000028317
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:CNN2
Ensembl ID:ENSGGOG00000028153
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2370
ATGAGCTCCACGCAGTTCAACAAGGACCCCTCGTACGGCTGTCAGCCGAGATCAAGAACCGGCTCCTGTGCAAATATAAC
CCCCAGAAGGAGGTAGAGCTCCGCAGCTGGATCGAGGGACTCACCAGCCTCTCCATCGGCCCCGACTTCCAGAAGGGCCT
GAAGGACGGGATTAGCTTATGGACACTCATGAACAAGCTACAGCCGGGCTCAGTCACCAAGATCAACCGTTCCATGCAGA
ACTGGCACCAACTAGAAAACCTCTCCAATTTCATCAAGGCCATGGTCAGCTACGGCATGAACACCGTGGACCTGTTCGAT
GCCAACGACCTGTTTGAGAGTGGGAACATGACGCAGCTGCAGGTGTCTCTTCTCGCCCTGGTGAGTAAGGCCAAGACTAA
GGGGCTGCAGAGCGGGGTGGACATCGGCCTTAAGTACTCGGAGAAGCAGGAGCCGAACTTCGACGACGCCACCATGAAGG
CTGGCCAGTGCACCATCGGGCTGCAGATGGGCACCAACAAATGCACCAGCCAGTCGGGCATGACCGCGTACAGCACAAGG
AGGCATCTCTACGACCCCAAGAACCACATCCTGCCCCCTATGGACCACTTAACCATCAGCCTCCAGATGGGTACAAACAA
GTGTGCCAGCCAGGTGGGCATGACGGCTCCCCGGACCCGG

ORF - retro_ggor_2370 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.04 %
Parental protein coverage: 73.46 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMSSTQFNKGPSYG-LSAEVKNRLLSKYDPQKEAELRTWIEGLTGLSIGPDFQKGLKDGTILCTLMNKLQP
MSSTQFNK.PSYG.LSAE.KNRLL.KY.PQKE.ELR.WIEGLT.LSIGPDFQKGLKDG..L.TLMNKLQP
RetrocopyMSSTQFNKDPSYG<LSAEIKNRLLCKYNPQKEVELRSWIEGLTSLSIGPDFQKGLKDGISLWTLMNKLQP
ParentalGSIPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVSLLALAGKAKTKGLQSG
GS..KINRSMQNWHQLENLSNFIKAMVSYGMN.VDLF.ANDLFESGNMTQ.QVSLLAL..KAKTKGLQSG
RetrocopyGSVTKINRSMQNWHQLENLSNFIKAMVSYGMNTVDLFDANDLFESGNMTQLQVSLLALVSKAKTKGLQSG
ParentalVDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTNKCASQSGMTAYGTRRHLYDPKNHILPPMDHSTISLQ
VDIG.KYSEKQE.NFDDATMKAGQC.IGLQMGTNKC.SQSGMTAY.TRRHLYDPKNHILPPMDH.TISLQ
RetrocopyVDIGLKYSEKQEPNFDDATMKAGQCTIGLQMGTNKCTSQSGMTAYSTRRHLYDPKNHILPPMDHLTISLQ
ParentalMGTNKCASQVGMTAPGTR
MGTNKCASQVGMTAP.TR
RetrocopyMGTNKCASQVGMTAPRTR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 7 .82 RPM
SRP007412_cerebellum 0 .00 RPM 5 .12 RPM
SRP007412_heart 0 .00 RPM 32 .30 RPM
SRP007412_kidney 0 .00 RPM 44 .49 RPM
SRP007412_liver 0 .00 RPM 54 .07 RPM
SRP007412_testis 0 .00 RPM 10 .26 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2370 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2370 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 13 parental genes, and 53 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000207641 retrocopy
Dipodomys ordii ENSDORG000000011411 retrocopy
Erinaceus europaeus ENSEEUG000000151711 retrocopy
Homo sapiens ENSG0000006466616 retrocopies
Gorilla gorilla ENSGGOG000000138701 retrocopy
Gorilla gorilla ENSGGOG00000028153 9 retrocopies
Myotis lucifugus ENSMLUG000000131604 retrocopies
Macaca mulatta ENSMMUG000000153061 retrocopy
Mus musculus ENSMUSG000000046652 retrocopies
Nomascus leucogenys ENSNLEG000000011612 retrocopies
Otolemur garnettii ENSOGAG000000101442 retrocopies
Pongo abelii ENSPPYG0000000930212 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000283671 retrocopy



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