RetrogeneDB ID: | retro_nleu_2893 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397471.1:1855601..1856142(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNN2 | ||
Ensembl ID: | ENSNLEG00000001161 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.32 % |
Parental protein coverage: | 75.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | QAKTKGLQSGVD-IGVKYSEKQERNFDDATMKAGQCVIGLQMGTNKCASQSGMTAYGTRRHLYDPKNHIL |
.AKTKGLQS..D.IG.KYSEKQE..FDDATM.A.QC.IGLQMGT..C.SQS.MTAY.TRRHLY.PKNHIL | |
Retrocopy | KAKTKGLQSRAD>IGDKYSEKQEWDFDDATMNARQCIIGLQMGTHECTSQSRMTAYSTRRHLYNPKNHIL |
Parental | PPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNSSMSLQMGYTQGANQSGQVFGLGRQI |
PPMDHSTISLQMG.NKCASQVG.TAP.TRRHIYDTKLGTDKC.NS.MSLQMGY.QGANQSGQVFGLG.QI | |
Retrocopy | PPMDHSTISLQMGANKCASQVGTTAPRTRRHIYDTKLGTDKCNNSFMSLQMGYMQGANQSGQVFGLGQQI |
Parental | YDPKYCPQGTVADGAPSGTGDCPDPGEVPEYPPYYQEGAGY |
YDPKYC.QG.VA.GAPSG.GDCP.PGE.PEY.PYYQE..GY | |
Retrocopy | YDPKYCLQGPVAHGAPSGAGDCPGPGEAPEYSPYYQEETGY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000001141 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015171 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000028153 | 9 retrocopies | |
Macaca mulatta | ENSMMUG00000015306 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001161 | 2 retrocopies |
retro_nleu_1757, retro_nleu_2893 ,
|
Nomascus leucogenys | ENSNLEG00000011207 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013350 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010144 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000009302 | 12 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000028367 | 1 retrocopy |