RetrogeneDB ID: | retro_eeur_332 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_258706:4646..5228(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATF1 | ||
Ensembl ID: | ENSEEUG00000008000 | ||
Aliases: | None | ||
Description: | activating transcription factor 1 [Source:HGNC Symbol;Acc:783] |
Percent Identity: | 83.92 % |
Parental protein coverage: | 80.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 6 |
Parental | VSSLSESEESQDSSDSIGSSQKVHGILARRPSYRKILKDLSSEDTRGRKGDGENPGISAVTSMSVPTPIY |
VSSL.ESEESQDSS.SIGSSQKVH.ILA.R.SYRKILKDLSSEDTRGRKGDGENPG.SAVTSMSVP.PIY | |
Retrocopy | VSSLLESEESQDSSNSIGSSQKVHRILAQRQSYRKILKDLSSEDTRGRKGDGENPGVSAVTSMSVPAPIY |
Parental | QTSTGQYIAIAPNGALQLASPGTDGVQGLQ-ALTMTNSGSTQQGTTILQYAQTSDGQQILV-PSNQVVVQ |
QTSTGQYIAI.PNGALQLASPGTDGVQGLQ.A.TMTNSGSTQQG.T.LQYAQTSDGQQILV.PSNQV..Q | |
Retrocopy | QTSTGQYIAITPNGALQLASPGTDGVQGLQ>AFTMTNSGSTQQG-TFLQYAQTSDGQQILV>PSNQVIIQ |
Parental | TASGDMQTYQIRTTPSAT-SLPQTVV-MTSPVT-LTSQTTKTDD-PQL-KREIRLMKNR |
TASGDMQ.YQI.TTPSAT.S..QTVV.MTSP...L.....KTDD.P.L.KREIRLMKNR | |
Retrocopy | TASGDMQNYQIHTTPSAT>SQQQTVV>MTSPGDFLHRRPLKTDD>PHL>KREIRLMKNR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 12 .09 RPM |
SRP017611_kidney | 0 .38 RPM | 45 .38 RPM |
SRP017611_liver | 0 .16 RPM | 22 .67 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004733 | 5 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008000 | 2 retrocopies |
retro_eeur_332 , retro_eeur_704,
|
Homo sapiens | ENSG00000123268 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023027 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017023 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000026029 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000010038 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004637 | 2 retrocopies |