RetrogeneDB ID: | retro_pcap_303 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_29067:8190..8670(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATF1 | ||
Ensembl ID: | ENSPCAG00000010038 | ||
Aliases: | None | ||
Description: | activating transcription factor 1 [Source:HGNC Symbol;Acc:783] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 59.04 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | IAPNGALQLASPGTDGVQGLPALTMTNSGSGQQGTTILQYAQTSDGQQILVPSNQVVVQTASGDMQTYQI |
..PN...QLASPGTDGVQ....LT.TN.G..QQGT.ILQY.QT.DGQQILVPSNQV.VQT..G...TYQI | |
Retrocopy | VVPNEVIQLASPGTDGVQEFQTLTTTNMGDIQQGT-ILQYTQTLDGQQILVPSNQVLVQTLPGGTPTYQI |
Parental | RTTPSATSLPQTVVMTSP-VTLTSQTTKTDDPQLKREIRLMKNREAARECRRKKKEYVKCLENRVAVLEN |
...PSATSLP.T.VMT.P.VT..SQ.TKT.D...KRE.RLMKNREAAR.CRRKKKEYVK.LENRVA.LEN | |
Retrocopy | CPAPSATSLPVTSVMTPPAVTPKSQSTKTEDLLQKREARLMKNREAARVCRRKKKEYVKSLENRVATLEN |
Parental | QNKTLIEELKTLKDLYSHKSV |
QN.TL.E...TLKDLYSHK.V | |
Retrocopy | QNRTLLEQIQTLKDLYSHKNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004733 | 5 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008000 | 2 retrocopies | |
Homo sapiens | ENSG00000123268 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023027 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017023 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000026029 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000010038 | 2 retrocopies |
retro_pcap_303 , retro_pcap_442,
|
Sarcophilus harrisii | ENSSHAG00000004637 | 2 retrocopies |