RetrogeneDB ID: | retro_etel_596 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_101038:562..905(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000000851 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOQ | ||
Ensembl ID: | ENSETEG00000019234 | ||
Aliases: | None | ||
Description: | ras homolog family member Q [Source:HGNC Symbol;Acc:17736] |
Percent Identity: | 69.49 % |
Parental protein coverage: | 73.89 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | CFSVVNPASFQNVKEEWVPELKEYAPNVPF-LLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEI |
C....NPASFQN.KE.W.PELKEYAPNVP..LLIG.Q.DL.DDP.TLA.L.D.KE.PVCVEQGQ.LA.EI | |
Retrocopy | CALTSNPASFQNGKEPWAPELKEYAPNVPV<LLIGIQMDLLDDPQTLASLHDTKENPVCVEQGQRLANEI |
Parental | GACCYVECSALTQKGLKTVFDEAIIAILTPKKHTV-KKRIGSRCINCC |
GA.CYV.C.A.TQ......FDE...A.LTPKKHT..KKRIGSRC.NCC | |
Retrocopy | GAGCYV*CAAVTQRE*R-LFDEVLVASLTPKKHTI<KKRIGSRCTNCC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006082 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000000549 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000015226 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004443 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012902 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000019234 | 3 retrocopies |
retro_etel_1468, retro_etel_596 , retro_etel_672,
|
Felis catus | ENSFCAG00000015608 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001567 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000013691 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015415 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008439 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011892 | 1 retrocopy |