Parental gene:

RHOQ, ENSSSCG00000008439

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:3:100058021..100097054(-)


>ENSSSCG00000008439
AGGCCGGCCGGCCGCAGCATGGCTCACGGGCCCGGCGCGCTGATGCTCAAGTGCGTGGTGGTCGGCGACGGGGCGGTGGG
CAAGACTTGCCTACTCATGAGCTATGCCAACGACGCCTTCCCGGAGGAGTACGTGCCCACCGTCTTCGACCACTACGCAG
TCAGCGTCACCGTAGGGGGCAAGCAGTACCTCCTGGGACTCTATGACACAGCCGGACAGGAAGACTATGATCGTCTGAGG
CCTTTATCTTATCCAATGACTGATGTCTTCCTTATATGCTTCTCTGTGGTAAATCCAGCCTCGTTTCAAAATGTGAAAGA
GGAGTGGGTGCCAGAACTTAAGGAATACGCACCAAATGTACCCTTTTTATTAATAGGAACTCAGATTGATCTCCGAGATG
ACCCCAAAACTTTAGCAAGACTGAATGATATGAAAGAAAAACCTATATGTGTGGAACAAGGACAGAAACTAGCAAAAGAG
ATAGGTGCGTGCTGCTATGTGGAATGTTCAGCTTTAACCCAGAAGGGATTGAAGACTGTTTTTGATGAGGCTATCATAGC
CATTTTAACTCCAAAGAAACACACAGTGAAAAAAAGAATAGGATCAAGATGTATAAACTGTTGTTTGATTACGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 10 .35 RPM
SRP014902_testis 9 .05 RPM
SRP018856_adipose 19 .91 RPM
SRP018288_kidney 6 .60 RPM
SRP018288_lung 32 .28 RPM
SRP018288_liver 1 .44 RPM
SRP018288_heart 104 .01 RPM
SRP035408_liver 4 .76 RPM
SRP035408_brain 24 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006082 ortholog_one2one 1 retrogene
retro_amel_383,
Choloepus hoffmanni ENSCHOG00000000549 ortholog_one2one 3 retrogenes
retro_chof_2030, retro_chof_457, retro_chof_914,
Callithrix jacchus ENSCJAG00000000685 ortholog_one2one 1 retrogene
retro_cjac_2403,
Erinaceus europaeus ENSEEUG00000015226 ortholog_one2one 1 retrogene
retro_eeur_129,
Echinops telfairi ENSETEG00000019234 ortholog_one2one 3 retrogenes
retro_etel_1468, retro_etel_596, retro_etel_672,
Felis catus ENSFCAG00000015608 ortholog_one2one 1 retrogene
retro_fcat_795,
Homo sapiens ENSG00000119729 ortholog_one2one 3 retrogenes
retro_hsap_1333, retro_hsap_2158, retro_hsap_2316,
Loxodonta africana ENSLAFG00000004327 ortholog_one2one 1 retrogene
retro_lafr_316,
Microcebus murinus ENSMICG00000009124 ortholog_one2one 1 retrogene
retro_mmur_29,
Myotis lucifugus ENSMLUG00000001567 ortholog_one2one 1 retrogene
retro_mluc_595,
Otolemur garnettii ENSOGAG00000033272 ortholog_one2one 1 retrogene
retro_ogar_742,
Pongo abelii ENSPPYG00000012439 ortholog_one2one 2 retrogenes
retro_pabe_1107, retro_pabe_2195,
Pteropus vampyrus ENSPVAG00000013691 ortholog_one2one 1 retrogene
retro_pvam_611,
Rattus norvegicus ENSRNOG00000015415 ortholog_one2one 1 retrogene
retro_rnor_473,
Sus scrofa ENSSSCG00000003520 within_species_paralog 1 retrogene
retro_sscr_899,
Sus scrofa ENSSSCG00000021944 other_paralog 4 retrogenes
retro_sscr_40, retro_sscr_565, retro_sscr_582, retro_sscr_882,
Tarsius syrichta ENSTSYG00000002837 ortholog_one2one 1 retrogene
retro_tsyr_1609,
Tursiops truncatus ENSTTRG00000011892 ortholog_one2one 1 retrogene
retro_ttru_805,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_102 62.50 63.03
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Download FASTA sequences of all ENSSSCG00000008439 retrocopies