RetrogeneDB ID: | retro_chof_457 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_111297:914..1407(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOQ | ||
Ensembl ID: | ENSCHOG00000000549 | ||
Aliases: | None | ||
Description: | ras homolog family member Q [Source:HGNC Symbol;Acc:17736] |
Percent Identity: | 54.65 % |
Parental protein coverage: | 82.93 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | AHGPGALMLKCVVVGDGAVGKTCLLMSYANDA-FPEEYVPT-VFDHYAVSVTVGGKQYLLGLYDTAGQED |
A.GPGALML..VVVG.G.VG...LL...A.D..FPEE.VP....DH.AV.V.V.G...L.....T.G... | |
Retrocopy | AGGPGALMLTGVVVGLGVVGSPRLLARGAEDP<FPEEDVPA<LCDHHAVGVPV-GQGHLVDSV-TRGDRR |
Parental | YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMK |
..R.RP.S.PM.D.FL...S.V.PAS....K......L.........LLIGTQI.L.DDPKT.ARL.DMK | |
Retrocopy | LARPRPSSHPMADLFLTSLSAVTPASSKT*KRRGYQNLRN-VHQMYLLLIGTQIHLPDDPKT*ARLTDMK |
Parental | EKPICVEQGQKLAKEIGACCYVECSALTQKGL |
EKP.CVEQGQKL..E.GACC.VECSA.T.K.L | |
Retrocopy | EKPVCVEQGQKL--EVGACCHVECSASTRKRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006082 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000000549 | 3 retrocopies |
retro_chof_2030, retro_chof_457 , retro_chof_914,
|
Choloepus hoffmanni | ENSCHOG00000005306 | 10 retrocopies | |
Callithrix jacchus | ENSCJAG00000000685 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015226 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000019234 | 3 retrocopies | |
Felis catus | ENSFCAG00000015608 | 1 retrocopy | |
Homo sapiens | ENSG00000119729 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000004327 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009124 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001567 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000033272 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012439 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013691 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015415 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008439 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002837 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011892 | 1 retrocopy |