RetrogeneDB ID: | retro_rnor_473 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:115180856..115181458(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000021484 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rhoq | ||
Ensembl ID: | ENSRNOG00000015415 | ||
Aliases: | Rhoq, Tc10 | ||
Description: | Rho-related GTP-binding protein RhoQ [Source:UniProtKB/Swiss-Prot;Acc:Q9JJL4] |
Percent Identity: | 96.6 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAHGP-GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED |
MAHGP.GALMLKCVVVGDGAVGK.CLLMSYANDAFPEEYVPTVFD....SVTVG.KQYLLGLYDTAGQED | |
Retrocopy | MAHGP<GALMLKCVVVGDGAVGKRCLLMSYANDAFPEEYVPTVFD----SVTVGDKQYLLGLYDTAGQED |
Parental | YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMK |
YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMK | |
Retrocopy | YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMK |
Parental | EKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTPKKHTVKKRIGSRCINCCLIT |
EKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTPKKHTVKKRIGSRCINCCLIT | |
Retrocopy | EKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTPKKHTVKKRIGSRCINCCLIT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 17 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 25 .54 RPM |
SRP017611_liver | 0 .00 RPM | 9 .08 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006082 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000000549 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000000685 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015226 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000019234 | 3 retrocopies | |
Felis catus | ENSFCAG00000015608 | 1 retrocopy | |
Homo sapiens | ENSG00000119729 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000004327 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009124 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001567 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000033272 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012439 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013691 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001068 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013536 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015415 | 1 retrocopy |
retro_rnor_473 ,
|
Sus scrofa | ENSSSCG00000008439 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002837 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011892 | 1 retrocopy |