RetrogeneDB ID: | retro_eeur_129 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_7951:55633..56001(-) | ||
Located in intron of: | ENSEEUG00000006518 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOQ | ||
Ensembl ID: | ENSEEUG00000015226 | ||
Aliases: | None | ||
Description: | ras homolog family member Q [Source:HGNC Symbol;Acc:17736] |
Percent Identity: | 73.02 % |
Parental protein coverage: | 78.98 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | DRLRPLSYPMTDVFLICFSVV-NPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD-PKTLARLNDM |
DRLRPL.YP.TDVF..C..VV..P..F...KE.WVPEL.EYAPNVP.LL.GTQIDL.DD.PK.L..LNDM | |
Retrocopy | DRLRPLYYPVTDVFFMCILVV>SPSHFKM*KE-WVPELQEYAPNVPCLLKGTQIDL*DD>PK-LWQLNDM |
Parental | KEKPICLEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTPKKHTVKKRI |
KEKP.CLEQGQKLAKEI.ACC.V..SALT.KGL.TVFDEA.IAILTPKKHT....I | |
Retrocopy | KEKPLCLEQGQKLAKEIAACCSVAYSALTLKGLETVFDEAVIAILTPKKHTESRYI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 6 .19 RPM |
SRP017611_liver | 0 .00 RPM | 4 .50 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006082 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000000549 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000000685 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009509 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015226 | 1 retrocopy |
retro_eeur_129 ,
|
Echinops telfairi | ENSETEG00000019234 | 3 retrocopies | |
Felis catus | ENSFCAG00000015608 | 1 retrocopy | |
Homo sapiens | ENSG00000119729 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000004327 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009124 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001567 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000033272 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012439 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013691 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015415 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008439 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002837 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011892 | 1 retrocopy |