RetrogeneDB ID: | retro_fcat_1693 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E2:46547526..46548062(+) | ||
Located in intron of: | ENSFCAG00000002652 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MEST | ||
Ensembl ID: | ENSFCAG00000022984 | ||
Aliases: | None | ||
Description: | mesoderm specific transcript [Source:HGNC Symbol;Acc:7028] |
Percent Identity: | 76.11 % |
Parental protein coverage: | 54.91 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MREWWVQVGLLAVPLLAAYLHIPPPQLSPALHSWKSSGKFFTYKGLRIFYQDSVGVVGSPEIVVLLHGFP |
M.EWWVQVG.LAVPL..AYL..P..QLSPALHSWKSSG.FFTY..L.IFYQDSVGVVG.PEIVV.L..FP | |
Retrocopy | MKEWWVQVG*LAVPLFVAYLCFPALQLSPALHSWKSSGRFFTYERLHIFYQDSVGVVGNPEIVVPLPRFP |
Parental | TSSYDWYKIWEGLTLRFHRVIALDFLGFGFSDK-PRPHHYSIFEQASIVEALLRHLGLQNRRINLLSHDY |
TSS.D.YKIWEGLT.RF.RVIAL.FL.FG.SDK..RPHH.SIFEQASI.EA.L.HLGLQN.RINLLSHDY | |
Retrocopy | TSSCD*YKIWEGLTVRF*RVIALGFLVFGRSDK<TRPHHCSIFEQASIIEAFLWHLGLQNHRINLLSHDY |
Parental | GDIVAQELLYRFKQNRSGRLTIKSLCLSNGGIFPETHRPL |
..IVAQ..LYRF.Q..S..LT..SL.LSNGGIFPE.HRPL | |
Retrocopy | RGIVAQKVLYRFEQK*SCQLTVRSLYLSNGGIFPEIHRPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 38 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .01 RPM |
SRP017611_liver | 0 .00 RPM | 2 .63 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005659 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000010760 | 2 retrocopies | |
Felis catus | ENSFCAG00000022984 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000006066 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000008227 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006129 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009499 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012841 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000009224 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018006 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000019698 | 2 retrocopies | |
Sorex araneus | ENSSARG00000000502 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000020977 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000008404 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000004934 | 4 retrocopies |