RetrogeneDB ID: | retro_nleu_1065 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397280.1:4672164..4672716(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MEST | ||
Ensembl ID: | ENSNLEG00000012841 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.67 % |
Parental protein coverage: | 54.93 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RMREWWVQVGLLAVPLLAAYLHIPPPQLSPALHSWKSSGKFFTYKGLRIFYQDSVGVVGSPEIVVLLHGF |
RMREWWVQVGLLAVPLLA.YLHIP.PQLSPALHSWKSSGKFFTYK.LRIFYQDSVGVVGSPEIVVLLH.F | |
Retrocopy | RMREWWVQVGLLAVPLLATYLHIPLPQLSPALHSWKSSGKFFTYKRLRIFYQDSVGVVGSPEIVVLLHDF |
Parental | PTSSYDWYKIWEGLTLRFHRVIALDFLGFGFSDKPRPHHYSIFEQASIVEALLRHLGLQNRRINLLSHDY |
PTSSYD.YKIWEGLTLRFHRVIALDFLGFGFSDKPR.HHYSI.EQASIVEALLRHLGLQN.R..LLSHDY | |
Retrocopy | PTSSYD*YKIWEGLTLRFHRVIALDFLGFGFSDKPRQHHYSICEQASIVEALLRHLGLQNHRNDLLSHDY |
Parental | GDIVAQELLYRYKQNRSGRLTIKSLCLSNGGIFPETHRPLLLQK |
GDIVAQELL.RYK.NRSGRLTIKSLCLSNGG.FPET..P...Q. | |
Retrocopy | GDIVAQELLHRYKRNRSGRLTIKSLCLSNGGVFPETPSPKATQR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005659 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000010760 | 2 retrocopies | |
Felis catus | ENSFCAG00000022984 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000006066 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000008227 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006129 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009499 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012841 | 3 retrocopies |
retro_nleu_1065 , retro_nleu_515, retro_nleu_790,
|
Otolemur garnettii | ENSOGAG00000009224 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018006 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000019698 | 2 retrocopies | |
Sorex araneus | ENSSARG00000000502 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000020977 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000004934 | 4 retrocopies |