Parental gene: | MEST, ENSPTRG00000019698 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 7:131976839..131991048(+) |
>ENSPTRG00000019698
ATGGTGCGCCGAGATCGCCTCCGCAGGATGAGGGAGTGGTGGGTCCAGGTGGGGCTGCTGGCCGTGCCCCTGCTTGCTGC
ATACCTGCACATCCCACCCCCTCAGCTCTCCCCTGCCCTTCACTCATGGAAGTCTTCAGGCAAGTTTTTCACTTACAAGG
GACTGCGTATCTTCTACCAAGACTCTGTGGGTGTGGTTGGAAGTCCAGAGATAGTTGTGCTTTTACACGGTTTTCCAACA
TCCAGCTACGACTGGTACAAGATTTGGGAAGGTCTGACCTTGAGGTTTCATCGGGTGATTGCCCTTGATTTCTTAGGCTT
TGGCTTCAGTGACAAACCGAGACCACATCACTATTCCATATTTGAGCAGGCCAGCATCGTGGAAGCGCTTTTGCGGCATC
TGGGGCTCCAGAACCGCAGGATCAACCTTCTTTCTCATGACTATGGAGATATTGTTGCTCAGGAGCTTCTCTACAGGTAC
AAGCAGAATCGATCTGGTCGGCTTACCATAAAGAGTCTCTGTCTGTCAAATGGAGGTATCTTTCCTGAGACTCACCGTCC
ACTCCTTCTCCAAAAGCTACTCAAAGATGGAGGTGTGCTGTCACCCATCCTCACACGACTGATGAACTTCTTTGTATTCT
CTCGAGGTCTCACCCCAGTCTTTGGGCCGTATACTCGGCCCTCTGAGAGTGAGCTGTGGGACATGTGGGCAGGGATCCGC
AACAATGACGGGAACTTAGTCATTGACAGTCTCTTACAGTACATCAATCAGAGGAAGAAGTTCAGAAGGCGCTGGGTGGG
AGCTCTTGCCTCTGTAACTATCCCCATTCATTTTATCTATGGGCCATTGGATCCTGTAAATCCCTATCCAGAGTTTTTGG
AGCTGTACAGGAAAACGCTGCCGCGGTCCACAGTGTCGATTCTGGATGACCACATTAGCCACTATCCACAGCTAGAGGAT
CCCATGGGCTTCTTGAATGCATATATGGGCTTCATCAACTCCTTCTGA
ATGGTGCGCCGAGATCGCCTCCGCAGGATGAGGGAGTGGTGGGTCCAGGTGGGGCTGCTGGCCGTGCCCCTGCTTGCTGC
ATACCTGCACATCCCACCCCCTCAGCTCTCCCCTGCCCTTCACTCATGGAAGTCTTCAGGCAAGTTTTTCACTTACAAGG
GACTGCGTATCTTCTACCAAGACTCTGTGGGTGTGGTTGGAAGTCCAGAGATAGTTGTGCTTTTACACGGTTTTCCAACA
TCCAGCTACGACTGGTACAAGATTTGGGAAGGTCTGACCTTGAGGTTTCATCGGGTGATTGCCCTTGATTTCTTAGGCTT
TGGCTTCAGTGACAAACCGAGACCACATCACTATTCCATATTTGAGCAGGCCAGCATCGTGGAAGCGCTTTTGCGGCATC
TGGGGCTCCAGAACCGCAGGATCAACCTTCTTTCTCATGACTATGGAGATATTGTTGCTCAGGAGCTTCTCTACAGGTAC
AAGCAGAATCGATCTGGTCGGCTTACCATAAAGAGTCTCTGTCTGTCAAATGGAGGTATCTTTCCTGAGACTCACCGTCC
ACTCCTTCTCCAAAAGCTACTCAAAGATGGAGGTGTGCTGTCACCCATCCTCACACGACTGATGAACTTCTTTGTATTCT
CTCGAGGTCTCACCCCAGTCTTTGGGCCGTATACTCGGCCCTCTGAGAGTGAGCTGTGGGACATGTGGGCAGGGATCCGC
AACAATGACGGGAACTTAGTCATTGACAGTCTCTTACAGTACATCAATCAGAGGAAGAAGTTCAGAAGGCGCTGGGTGGG
AGCTCTTGCCTCTGTAACTATCCCCATTCATTTTATCTATGGGCCATTGGATCCTGTAAATCCCTATCCAGAGTTTTTGG
AGCTGTACAGGAAAACGCTGCCGCGGTCCACAGTGTCGATTCTGGATGACCACATTAGCCACTATCCACAGCTAGAGGAT
CCCATGGGCTTCTTGAATGCATATATGGGCTTCATCAACTCCTTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 19 .11 RPM |
| SRP007412_cerebellum | 6 .74 RPM |
| SRP007412_heart | 2 .42 RPM |
| SRP007412_kidney | 23 .88 RPM |
| SRP007412_liver | 12 .05 RPM |
| SRP007412_testis | 28 .56 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000005659 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000010760 | possible_ortholog | 2 retrogenes | |
| Felis catus | ENSFCAG00000022984 | ortholog_one2one | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000006066 | ortholog_one2one | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000008227 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000006129 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000009499 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012841 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000009224 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000018006 | ortholog_one2one | 4 retrogenes | |
| Sorex araneus | ENSSARG00000000502 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000020977 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000004934 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1769 | 80.84 | 63.88 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2045 | 82.78 | 89.55 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000019698 retrocopies