Parental gene: | MEST, ENSPPYG00000018006 |
| Aliases: | None |
| Description: | mesoderm specific transcript [Source:HGNC Symbol;Acc:7028] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 7:127448312..127466601(+) |
>ENSPPYG00000018006
ATGGTGCGCCGAGATCGCCTCCGCAGGATGAGGGAGTGGTGGGTCCAGGTGGGGCTGCTGGCCGTTCCCCTGCTTGCTGC
GTACCTGCACATCCCACCCCCTCAGCTCTCCCCTGCGCTTCACTCATGGAAGTCTTCAGGCAAGTTTTTCACTTACAAGG
GACTGCGTATCTTCTACCAAGACTCTGTGGGTGTGGTTGGAAGTCCAGAGATAGTTGTGCTTTTACACGGTTTTCCAACA
TCCAGCTACGATTGGTACAAGATTTGGGAAGGTCTGACCTTGAGGTTTCATCGGGTGATTGCCCTTGATTTCTTAGGCTT
TGGCTTCAGTGACAAACCGAGACCACATCACTATTCCATATTTGAGCAGGCCAGCATCGTGGAAGCGCTTTTGCGGCATC
TGGGGCTCCAGAACCGCAGGATCAACCTTCTTTCTCATGACTATGGAGATATTGTTGCTCAGGAGCTTCTCTACAGGTAC
AAGCAGAATCGATCTGGTCGGCTTACCATAAAGAGTCTCTGTCTGTCAAATGGAGGTATCTTTCCTGAGACTCACCGTCC
ACTCCTTCTCCAAAAGCTACTCAAAGATGGAGGTGTGCTGTCACCTATCCTCACACGACTGATGAACTTCTTTGTATTCT
CCCGAGGTCTCACCCCAGTCTTTGGGCCGTATACTCGGCCCTCTGAGAGTGAGCTGTGGGACATGTGGGCAGGGATCCGC
AACAATGACGGGAACTTAGTCATTGACAGTCTCTTACAGTACATCAATCAGAGGAAGAAGTTCAGAAGGCGCTGGGTGGG
AGCTCTTGCCTCTGTAACTATCCCCATTCATTTTATCTATGGGCCATTGGATCCTGTAAATCCCTATCCAGAGTTTTTGG
AGCTGTACAGGAAAACGCTGCCGCGGTCCACAGTGTCGATTCTGGATGACCACATTAGCCACTATCCACAGCTAGAGGAT
CCCATGGGCTTCTTGAATGCATATATGGGCTTCATCAACTCCTTCTGA
ATGGTGCGCCGAGATCGCCTCCGCAGGATGAGGGAGTGGTGGGTCCAGGTGGGGCTGCTGGCCGTTCCCCTGCTTGCTGC
GTACCTGCACATCCCACCCCCTCAGCTCTCCCCTGCGCTTCACTCATGGAAGTCTTCAGGCAAGTTTTTCACTTACAAGG
GACTGCGTATCTTCTACCAAGACTCTGTGGGTGTGGTTGGAAGTCCAGAGATAGTTGTGCTTTTACACGGTTTTCCAACA
TCCAGCTACGATTGGTACAAGATTTGGGAAGGTCTGACCTTGAGGTTTCATCGGGTGATTGCCCTTGATTTCTTAGGCTT
TGGCTTCAGTGACAAACCGAGACCACATCACTATTCCATATTTGAGCAGGCCAGCATCGTGGAAGCGCTTTTGCGGCATC
TGGGGCTCCAGAACCGCAGGATCAACCTTCTTTCTCATGACTATGGAGATATTGTTGCTCAGGAGCTTCTCTACAGGTAC
AAGCAGAATCGATCTGGTCGGCTTACCATAAAGAGTCTCTGTCTGTCAAATGGAGGTATCTTTCCTGAGACTCACCGTCC
ACTCCTTCTCCAAAAGCTACTCAAAGATGGAGGTGTGCTGTCACCTATCCTCACACGACTGATGAACTTCTTTGTATTCT
CCCGAGGTCTCACCCCAGTCTTTGGGCCGTATACTCGGCCCTCTGAGAGTGAGCTGTGGGACATGTGGGCAGGGATCCGC
AACAATGACGGGAACTTAGTCATTGACAGTCTCTTACAGTACATCAATCAGAGGAAGAAGTTCAGAAGGCGCTGGGTGGG
AGCTCTTGCCTCTGTAACTATCCCCATTCATTTTATCTATGGGCCATTGGATCCTGTAAATCCCTATCCAGAGTTTTTGG
AGCTGTACAGGAAAACGCTGCCGCGGTCCACAGTGTCGATTCTGGATGACCACATTAGCCACTATCCACAGCTAGAGGAT
CCCATGGGCTTCTTGAATGCATATATGGGCTTCATCAACTCCTTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 19 .02 RPM |
| SRP007412_cerebellum | 18 .36 RPM |
| SRP007412_heart | 0 .84 RPM |
| SRP007412_kidney | 8 .52 RPM |
| SRP007412_liver | 10 .01 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000005659 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000010760 | possible_ortholog | 2 retrogenes | |
| Felis catus | ENSFCAG00000022984 | ortholog_one2one | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000006066 | ortholog_one2one | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000008227 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000006129 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000009499 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012841 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000009224 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000019698 | ortholog_one2one | 2 retrogenes | |
| Sorex araneus | ENSSARG00000000502 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000020977 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000004934 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_866 | 97.92 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2337 | 79.17 | 64.48 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_2510 | 87.13 | 89.55 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_2511 | 86.75 | 89.55 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000018006 retrocopies