Parental gene:

MEST, ENSFCAG00000022984

Aliases:None
Description:mesoderm specific transcript [Source:HGNC Symbol;Acc:7028]
Organism:Cat (Felis catus)
Coordinates:A2:146687394..146708667(+)


>ENSFCAG00000022984
ATGAGGGAGTGGTGGGTGCAGGTGGGTCTGCTGGCTGTGCCCCTGCTTGCGGCCTACCTGCATATCCCACCCCCCCAGCT
TTCCCCTGCCCTTCACTCCTGGAAGTCGTCGGGCAAGTTTTTCACCTACAAGGGACTGCGCATCTTCTACCAAGACTCTG
TGGGTGTGGTTGGAAGTCCTGAGATAGTTGTGCTTTTGCATGGCTTTCCAACATCCAGCTATGATTGGTACAAGATTTGG
GAAGGTCTGACCCTAAGGTTTCATCGAGTGATCGCCCTTGATTTCTTGGGCTTTGGCTTCAGTGACAAACCGAGACCACA
TCACTATTCCATATTTGAGCAGGCCAGCATTGTGGAGGCACTTTTGCGGCACCTGGGGCTCCAGAACCGCAGGATCAACC
TTTTGTCTCATGACTATGGAGATATCGTTGCTCAGGAGCTGCTCTATAGGTTCAAGCAGAATCGATCTGGTCGGCTTACC
ATAAAGAGTCTCTGTCTGTCAAATGGAGGTATATTTCCTGAGACTCACCGTCCTCTCCTACTCCAAAAGCTCCTCAAAGA
TGGAGGCGTGCTGTCACCCATCCTGACACGATTGATGAACTTCTTTGTATTCTCCCGAGGTCTCACCCCAGTCTTTGGGC
CGTACACCCGCCCCTCTGAGAGTGAGCTGTGGGACATGTGGGCAGGGATCCGCAACAATGACGGAAACTTAGTCATCGAC
AGTCTCTTACAGTACATCAACCAGAGGAAGAAGTTTAGAAGACGCTGGGTGGGAGCTCTTGCTTCTGTAACTATTCCCAT
TCATTTTATCTATGGGCCACTGGATCCCGTAAACCCCTATCCAGAGTTTTTGGAGCTGTACAGGAAAACGCTGCCGCGGT
CCACAGTGTCGATTCTGGATGACCACATTAGCCACTATCCACAGCTAGAGGATCCCATGGGCTTCTTGAATGCATATATG
GGCTTCATCAACTCCTTCTGA

Library Parental gene expression (RPM)
SRP017611_brain 38 .10 RPM
SRP017611_kidney 7 .01 RPM
SRP017611_liver 2 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005659 ortholog_one2one 2 retrogenes
retro_amel_1177, retro_amel_1874,
Callithrix jacchus ENSCJAG00000010760 ortholog_one2many 2 retrogenes
retro_cjac_1563, retro_cjac_3931,
Loxodonta africana ENSLAFG00000006066 ortholog_one2one 3 retrogenes
retro_lafr_578, retro_lafr_584, retro_lafr_748,
Macropus eugenii ENSMEUG00000008227 ortholog_one2one 1 retrogene
retro_meug_885,
Microcebus murinus ENSMICG00000006129 ortholog_one2one 1 retrogene
retro_mmur_1091,
Macaca mulatta ENSMMUG00000009499 ortholog_one2many 2 retrogenes
retro_mmul_1936, retro_mmul_94,
Nomascus leucogenys ENSNLEG00000012841 ortholog_one2one 3 retrogenes
retro_nleu_1065, retro_nleu_515, retro_nleu_790,
Otolemur garnettii ENSOGAG00000009224 ortholog_one2one 1 retrogene
retro_ogar_3464,
Pongo abelii ENSPPYG00000018006 ortholog_one2one 4 retrogenes
retro_pabe_2337, retro_pabe_2510, retro_pabe_2511, retro_pabe_866,
Pan troglodytes ENSPTRG00000019698 ortholog_one2one 2 retrogenes
retro_ptro_1769, retro_ptro_2045,
Sorex araneus ENSSARG00000000502 ortholog_one2one 1 retrogene
retro_sara_352,
Ictidomys tridecemlineatus ENSSTOG00000020977 ortholog_one2one 2 retrogenes
retro_itri_1210, retro_itri_1610,
Tupaia belangeri ENSTBEG00000008404 ortholog_one2one 2 retrogenes
retro_tbel_1480, retro_tbel_526,
Tursiops truncatus ENSTTRG00000004934 ortholog_one2one 4 retrogenes
retro_ttru_1026, retro_ttru_1115, retro_ttru_1133, retro_ttru_1907,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_326 68.40 81.29
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2. retro_fcat_1067 74.36 83.13
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3. retro_fcat_1645 74.85 50.61
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4. retro_fcat_1693 76.11 54.91
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5. retro_fcat_2004 70.56 65.34
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Download FASTA sequences of all ENSFCAG00000022984 retrocopies