RetrogeneDB ID:

retro_fcat_717

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:B2:86983571..86983904(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RAC1
Ensembl ID:ENSFCAG00000011361
Aliases:None
Description:ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) [Source:HGNC Symbol;Acc:9801]


Retrocopy-Parental alignment summary:






>retro_fcat_717
GTGAGTCCTACATCATTTGAAAATGTTAGAGGAGAGTGGTACCCTGAACTGCAACACCTCTGTACCAACACCCCCATCAT
CCTGGTGGGGACTAAACTTGATCTCAGGGACAACAAAGATATGATTGAAAAACTGAAGGAAAAGAAGCTGACTCCCATCA
CCTACCCACAGGGTTTGGCCATGGCTAAGGAGACTGATGCTTTAAAACACCTGCAGTGCTTGGCTCTCACGCAGTGATGC
TTCAAGACAGTGTTTGATGAAGCTTTTTGAGCAGTTCTCTGCCCACCCTTAGCCTCCACCACCAAGAAGAGAAAGAGAAA
ATACCTACTATTG

ORF - retro_fcat_717 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.58 %
Parental protein coverage: 51.18 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY
VSP.SFENVR..WYPE..H.C.NTPIILVGTKLDLRD.KD.IEKLKEKKLTPITYPQGLAMAKE..A.K.
RetrocopyVSPTSFENVRGEWYPELQHLCTNTPIILVGTKLDLRDNKDMIEKLKEKKLTPITYPQGLAMAKETDALKH
ParentalLECSALTQRGLKTVFDEAIRAVLCPP---PVKKRKRKCLLL
L.C.ALTQ...KTVFDEA..AVLCPP.....KKRKRK.LLL
RetrocopyLQCLALTQ*CFKTVFDEAF*AVLCPPLASTTKKRKRKYLLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 92 .74 RPM
SRP017611_kidney 0 .00 RPM 32 .57 RPM
SRP017611_liver 0 .00 RPM 27 .80 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_717 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_717 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 23 retrocopies.

Species Parental gene accession Retrocopies number
Felis catus ENSFCAG000000048534 retrocopies
Felis catus ENSFCAG00000011361 2 retrocopies
retro_fcat_1632, retro_fcat_717 ,
Felis catus ENSFCAG000000116711 retrocopy
Felis catus ENSFCAG000000156081 retrocopy
Felis catus ENSFCAG000000257762 retrocopies
Gorilla gorilla ENSGGOG000000267332 retrocopies
Loxodonta africana ENSLAFG000000128441 retrocopy
Myotis lucifugus ENSMLUG000000097011 retrocopy
Pan troglodytes ENSPTRG000000189104 retrocopies
Tupaia belangeri ENSTBEG000000072724 retrocopies
Xenopus tropicalis ENSXETG000000275931 retrocopy



Copyright © RetrogeneDB 2014-2017