RetrogeneDB ID: | retro_ggor_2110 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 4:116549203..116549704(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000011380 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000136238 | ||
Ensembl ID: | ENSGGOG00000026733 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.83 % |
Parental protein coverage: | 87.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RVIENIFFNANAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLS |
..I........AVGKTCLLISYTT.AFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT..QEDYDRL.PLS | |
Retrocopy | QAIKGVVVGDRAVGKTCLLISYTTSAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTVAQEDYDRLCPLS |
Parental | YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ |
YPQTDVFLICFSLVSPASFE.VRAKWYPEV.HHCPNTPIILVGTKL.LRDD.DTIEKLKEKKLTPITY.Q | |
Retrocopy | YPQTDVFLICFSLVSPASFEKVRAKWYPEVEHHCPNTPIILVGTKLELRDDTDTIEKLKEKKLTPITYLQ |
Parental | GLAMAKEIGAVKYLECSALTQRGLKTV |
GLAMAKEIGAVKYL.CSALTQRGL..V | |
Retrocopy | GLAMAKEIGAVKYLKCSALTQRGLNSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .24 RPM | 266 .91 RPM |
SRP007412_cerebellum | 0 .08 RPM | 198 .76 RPM |
SRP007412_heart | 0 .00 RPM | 59 .44 RPM |
SRP007412_kidney | 0 .08 RPM | 217 .57 RPM |
SRP007412_liver | 0 .00 RPM | 108 .55 RPM |
SRP007412_testis | 0 .00 RPM | 153 .22 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3072 |
Pongo abelii | retro_pabe_2546 |
Macaca mulatta | retro_mmul_1964 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009233 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000015716 | 1 retrocopy | |
Felis catus | ENSFCAG00000011361 | 2 retrocopies | |
Homo sapiens | ENSG00000136238 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000007948 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010612 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000024439 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000026733 | 2 retrocopies |
retro_ggor_2110 , retro_ggor_217,
|
Loxodonta africana | ENSLAFG00000012844 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009701 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021075 | 4 retrocopies | |
Mus musculus | ENSMUSG00000001847 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009956 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018910 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000001068 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006784 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007272 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000001618 | 2 retrocopies | |
Xenopus tropicalis | ENSXETG00000027593 | 1 retrocopy |