RetrogeneDB ID: | retro_fcat_129 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E3:15896857..15897433(-) | ||
Located in intron of: | ENSFCAG00000021883 | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000026551 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000004853 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.91 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL |
MQTIKCVVVGD.AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD.A.QEDYDRLRPL | |
Retrocopy | MQTIKCVVVGDDAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDPAEQEDYDRLRPL |
Parental | SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE |
SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE | |
Retrocopy | SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE |
Parental | TAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKTRRCVLL |
TAEKLARDLKAVKYVECSALTQKGLKNVFDE.ILAALEPPEPKKTRRCVLL | |
Retrocopy | TAEKLARDLKAVKYVECSALTQKGLKNVFDEGILAALEPPEPKKTRRCVLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .41 RPM | 50 .27 RPM |
SRP017611_kidney | 1 .55 RPM | 38 .65 RPM |
SRP017611_liver | 0 .81 RPM | 17 .29 RPM |