RetrogeneDB ID:

retro_ggor_217

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:X:135041265..135041844(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000026094
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:ENSG00000136238
Ensembl ID:ENSGGOG00000026733
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_217
ATGCAGGCCATCAAGGGCGTGGTGGTGGGAGACGGAGCTGTAGGTAAAACTTGCCTACAGATCAGTTACACAATCAACGC
ATTTCCTGGAGAAGATATCCCTACTGCCTTTGACAATTATTCTGCCAATGTTATGGTAGATGGAAAACTGGTGAATCTGG
GCTTATGGAATACAGCTGGACAAGAAGATTATGACAGATTACGCCCCCTATCCTATCCGCAAGCAGATGTGTTCTTAATT
TGCTTTTCGCTTGTGAGCCCTGCATCATTTGAAAATGTCCTTGCAAAGTGGTATCCTGAGGTGCAGCACCACTGTCCCAA
CACTCCCATCATCCTAGTGGGAACTAAACTTGATCTTAGGGATGATGAAGACAGGATCGAGAAACTGAAGGAGAAGAAGC
TGACTCCCATCACCTATCCGCAGGGTCTAGCCATGGCTAAGGAGATTGGTGCTGTAATATACCTGGAGTGCTTGGCCCTC
ACACAGCGAGGTCTCAAGACAGTGTTTGACGAAGCGATCCGAGCTGTCCTCTGCCCACCTCCCGTGAAGAAGAGGAAGAG
AAAATGCCTGCAGTTGTAA

ORF - retro_ggor_217 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.43 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRVIENIFFNANAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLS
..I........AVGKTCL.ISYT.NAFPGE.IPT.FDNYSANVMVDGK.VNLGLW.TAGQEDYDRLRPLS
RetrocopyQAIKGVVVGDGAVGKTCLQISYTINAFPGEDIPTAFDNYSANVMVDGKLVNLGLWNTAGQEDYDRLRPLS
ParentalYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ
YPQ.DVFLICFSLVSPASFENV.AKWYPEV.HHCPNTPIILVGTKLDLRDD.D.IEKLKEKKLTPITYPQ
RetrocopyYPQADVFLICFSLVSPASFENVLAKWYPEVQHHCPNTPIILVGTKLDLRDDEDRIEKLKEKKLTPITYPQ
ParentalGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL
GLAMAKEIGAV.YLEC.ALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCL.L
RetrocopyGLAMAKEIGAVIYLECLALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLQL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 266 .91 RPM
SRP007412_cerebellum 0 .12 RPM 198 .76 RPM
SRP007412_heart 0 .00 RPM 59 .44 RPM
SRP007412_kidney 0 .04 RPM 217 .57 RPM
SRP007412_liver 0 .05 RPM 108 .55 RPM
SRP007412_testis 0 .10 RPM 153 .22 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_217 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_217 has 4 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_4910
Pan troglodytes retro_ptro_3274
Pongo abelii retro_pabe_3818
Macaca mulatta retro_mmul_2642

Parental genes homology:
Parental genes homology involve 19 parental genes, and 43 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000092332 retrocopies
Canis familiaris ENSCAFG000000157161 retrocopy
Felis catus ENSFCAG000000113612 retrocopies
Homo sapiens ENSG000001362386 retrocopies
Gorilla gorilla ENSGGOG000000079481 retrocopy
Gorilla gorilla ENSGGOG000000106122 retrocopies
Gorilla gorilla ENSGGOG000000244395 retrocopies
Gorilla gorilla ENSGGOG00000026733 2 retrocopies
retro_ggor_2110, retro_ggor_217 ,
Loxodonta africana ENSLAFG000000128441 retrocopy
Myotis lucifugus ENSMLUG000000097011 retrocopy
Macaca mulatta ENSMMUG000000210754 retrocopies
Mus musculus ENSMUSG000000018472 retrocopies
Oryctolagus cuniculus ENSOCUG000000099561 retrocopy
Pan troglodytes ENSPTRG000000189104 retrocopies
Rattus norvegicus ENSRNOG000000010681 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000067841 retrocopy
Tupaia belangeri ENSTBEG000000072724 retrocopies
Tarsius syrichta ENSTSYG000000016182 retrocopies
Xenopus tropicalis ENSXETG000000275931 retrocopy



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