RetrogeneDB ID: | retro_fcat_1064 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:112972948..112973382(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAC2 | ||
Ensembl ID: | ENSFCAG00000025776 | ||
Aliases: | None | ||
Description: | ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) [Source:HGNC Symbol;Acc:9802] |
Percent Identity: | 74.17 % |
Parental protein coverage: | 69.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | AASQAPDAMQAIKCVVVGDGAV-GKTCLLISYTTNAFPGEYIP-TVFDNYSANVMVDSKPVNLGLWDTAG |
A..Q....MQAIK.VV....AV..KTCLLISYTTNAFPGEYIP.TVFDNYSANVMVD.KPVNL.LWDTAG | |
Retrocopy | AEAQQAAQMQAIKRVVAYYRAV<SKTCLLISYTTNAFPGEYIP<TVFDNYSANVMVDGKPVNLDLWDTAG |
Parental | QEDYDRLRPLSYPQTPVVTSFFICF-SLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTI |
QEDYDRLRPLS...T.V...F.ICF.S.VSP.S.ENV.A.W.PEV.HHCP..PIILVGTKLDLRDDKD.I | |
Retrocopy | QEDYDRLRPLSSQRTDV---FLICF>SFVSPVSFENVGAEWYPEVQHHCPNAPIILVGTKLDLRDDKDRI |
Parental | ERLKEKKLAPI |
..LK.KKL.PI | |
Retrocopy | GQLKDKKLTPI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .57 RPM | 0 .69 RPM |
SRP017611_kidney | 0 .31 RPM | 0 .52 RPM |
SRP017611_liver | 0 .00 RPM | 1 .72 RPM |