RetrogeneDB ID: | retro_ggor_1137 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 15:19662674..19663118(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000012445 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM92A1 | ||
Ensembl ID: | ENSGGOG00000006452 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.59 % |
Parental protein coverage: | 51.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RHVISQAETELQRAAMDASRTSRHLEETINNFERQKMKDIKTIFSEFITIEMLFHGKALEVYTAAYQNIQ |
RHVISQAETELQR.AMDASRTSRHLEET.NNFERQKMKDIKTIFSEFITIEMLFHG.ALEVY.AAY.NIQ | |
Retrocopy | RHVISQAETELQRTAMDASRTSRHLEETMNNFERQKMKDIKTIFSEFITIEMLFHG*ALEVYIAAYRNIQ |
Parental | NIDEDEDLEVFRNSLYAPDYSSRLDIVRANSKSPLQRSLSAKCVSGTGQVSTCRLRKDQQAEDDEDEELD |
NIDEDEDLEVFRNSLYAPDYSS.LD.VRANSKSPLQRSLSAKCVSGT.QVSTCRLRKDQQAEDDEDEELD | |
Retrocopy | NIDEDEDLEVFRNSLYAPDYSSCLDTVRANSKSPLQRSLSAKCVSGTRQVSTCRLRKDQQAEDDEDEELD |
Parental | VTEEENFL |
VTEEENFL | |
Retrocopy | VTEEENFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .24 RPM | 8 .87 RPM |
SRP007412_cerebellum | 0 .20 RPM | 5 .71 RPM |
SRP007412_heart | 0 .00 RPM | 1 .72 RPM |
SRP007412_kidney | 0 .16 RPM | 7 .77 RPM |
SRP007412_liver | 0 .00 RPM | 7 .33 RPM |
SRP007412_testis | 6 .84 RPM | 164 .72 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1485 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000009105 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000013003 | 1 retrocopy | |
Homo sapiens | ENSG00000188343 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006452 | 1 retrocopy |
retro_ggor_1137 ,
|
Loxodonta africana | ENSLAFG00000003954 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006797 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007447 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000009112 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002773 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002972 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000002446 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011171 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018744 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000012502 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012378 | 1 retrocopy |