RetrogeneDB ID: | retro_ttru_45 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_1021:14679..15146(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM92A1 | ||
Ensembl ID: | ENSTTRG00000012378 | ||
Aliases: | None | ||
Description: | family with sequence similarity 92, member A1 [Source:HGNC Symbol;Acc:30452] |
Percent Identity: | 58.9 % |
Parental protein coverage: | 50.96 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LKAYGTIVKMKRDDLKATLTARNREAKQLTQLERTRQR-NPSDRHVITQAETELQRATMDAARTT-RHLE |
L.A.GTIV..KRDDL.AT.T.RN.EAKQL...ERT.Q...PS...VI....T.LQRAT.D...TT..HLE | |
Retrocopy | LAAEGTIVEIKRDDLTATSTSRNGEAKQLREVERTSQH<HPSAGPVISW-RTHLQRATLDVVQTT<AHLE |
Parental | ETIDSFEKQKIKDIKTIFSEFITIEMLFHGKALEVYTAAYQNIQKIDEEEDL-EVFRNSLYPPDYSSRLD |
ET..SFEKQK.KDIKT.FSEFIT.EMLF..KA.EVYT.AY...Q.I.......EVFR.S.Y.PDY.S.L. | |
Retrocopy | ETAGSFEKQKVKDIKTVFSEFITTEMLFQSKASEVYTGAY---QNIQKIDEI>EVFRSSRYSPDYPSHLY |
Parental | IVRANSKSPLQRSLSAKCVSGTG |
IVRANS..P.QR.........TG | |
Retrocopy | IVRANS*LPFQRFF*LSVCNRTG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000009105 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000013003 | 1 retrocopy | |
Homo sapiens | ENSG00000188343 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006452 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003954 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006797 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007447 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000009112 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002773 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002972 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000002446 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011171 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018744 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000012502 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012378 | 1 retrocopy |
retro_ttru_45 ,
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