RetrogeneDB ID:

retro_ttru_45

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1021:14679..15146(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FAM92A1
Ensembl ID:ENSTTRG00000012378
Aliases:None
Description:family with sequence similarity 92, member A1 [Source:HGNC Symbol;Acc:30452]


Retrocopy-Parental alignment summary:






>retro_ttru_45
CTTGCGGCCGAAGGAACCATAGTAGAAATTAAACGGGATGACCTCACAGCGACATCAACATCAAGGAATGGAGAAGCTAA
GCAGCTACGTGAAGTAGAAAGGACGAGTCAGCACACCCATCCGCTGGACCTGTTATTTCATGGCGAACCCACTTACAGAG
AGCTACCCTGGATGTTGTGCAAACAACGCTCACCTGGAGGAAACTGCTGGCAGTTTTGAAAAGCAGAAAGTAAAGGATAT
AAAGACTGTATTTTCAGAATTTATCACTACTGAAATGCTATTTCAGAGCAAAGCTTCAGAGGTATACACTGGTGCCTACC
AAAATATACAAAAGATTGATGAGATTTGAGGTTTTCAGAAGCTCTAGGTATTCACCCGATTATCCATCTCACTTGTATAT
TGTAAGAGCAAATTCATAGTTGCCTTTTCAGAGATTTTTTTAGCTAAGTGTCTGCAACAGGACAGGT

ORF - retro_ttru_45 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 58.9 %
Parental protein coverage: 50.96 %
Number of stop codons detected: 2
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalLKAYGTIVKMKRDDLKATLTARNREAKQLTQLERTRQR-NPSDRHVITQAETELQRATMDAARTT-RHLE
L.A.GTIV..KRDDL.AT.T.RN.EAKQL...ERT.Q...PS...VI....T.LQRAT.D...TT..HLE
RetrocopyLAAEGTIVEIKRDDLTATSTSRNGEAKQLREVERTSQH<HPSAGPVISW-RTHLQRATLDVVQTT<AHLE
ParentalETIDSFEKQKIKDIKTIFSEFITIEMLFHGKALEVYTAAYQNIQKIDEEEDL-EVFRNSLYPPDYSSRLD
ET..SFEKQK.KDIKT.FSEFIT.EMLF..KA.EVYT.AY...Q.I.......EVFR.S.Y.PDY.S.L.
RetrocopyETAGSFEKQKVKDIKTVFSEFITTEMLFQSKASEVYTGAY---QNIQKIDEI>EVFRSSRYSPDYPSHLY
ParentalIVRANSKSPLQRSLSAKCVSGTG
IVRANS..P.QR.........TG
RetrocopyIVRANS*LPFQRFF*LSVCNRTG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_45 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_45 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 17 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000091051 retrocopy
Echinops telfairi ENSETEG000000130031 retrocopy
Homo sapiens ENSG000001883431 retrocopy
Gorilla gorilla ENSGGOG000000064521 retrocopy
Loxodonta africana ENSLAFG000000039541 retrocopy
Microcebus murinus ENSMICG000000067971 retrocopy
Monodelphis domestica ENSMODG000000074472 retrocopies
Mustela putorius furoENSMPUG000000091121 retrocopy
Nomascus leucogenys ENSNLEG000000027731 retrocopy
Otolemur garnettii ENSOGAG000000029721 retrocopy
Oreochromis niloticus ENSONIG000000024461 retrocopy
Procavia capensis ENSPCAG000000111711 retrocopy
Pongo abelii ENSPPYG000000187442 retrocopies
Tarsius syrichta ENSTSYG000000125021 retrocopy
Tursiops truncatus ENSTTRG00000012378 1 retrocopy
retro_ttru_45 ,



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