RetrogeneDB ID: | retro_ggor_1165 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 15:70097018..70097435(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PERP | ||
Ensembl ID: | ENSGGOG00000028340 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.52 % |
Parental protein coverage: | 71.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GGSGSYEEGCQSLMEYAWGRAAAAMLFCGFIILVICFILSFF-ALCGPQMLVFLRVIGGLLALAAVFQII |
GGSGS.EEGC.SLMEYAWGRAAAAMLF.G..ILVICFILSFF..LC.PQ..VFLRVIGGLLALAAVFQII | |
Retrocopy | GGSGS*EEGCHSLMEYAWGRAAAAMLFWGVSILVICFILSFFFVLCVPQIHVFLRVIGGLLALAAVFQII |
Parental | SLVIYPVKYTQ-TFALHA-NPAVTYIYNWAYGFGWAATIILIGCAFFFCCLPNYEDDLLGNAKPRYFYTS |
SLVIYPVKYTQ.TF.LHA..PAVT.IYNWAYGFGWAA.IILIGCAFF.CCLP.YEDDLLGN.KPRYFYTS | |
Retrocopy | SLVIYPVKYTQ<TFNLHA>SPAVTSIYNWAYGFGWAAMIILIGCAFFCCCLPSYEDDLLGNTKPRYFYTS |
Parental | A |
A | |
Retrocopy | A |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 7 .15 RPM | 1 .49 RPM |
SRP007412_cerebellum | 4 .69 RPM | 3 .35 RPM |
SRP007412_heart | 0 .81 RPM | 13 .76 RPM |
SRP007412_kidney | 1 .55 RPM | 18 .11 RPM |
SRP007412_liver | 0 .95 RPM | 52 .07 RPM |
SRP007412_testis | 1 .76 RPM | 4 .04 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1523 |
Pongo abelii | retro_pabe_1267 |
Macaca mulatta | retro_mmul_2156 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020097 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000019024 | 1 retrocopy | |
Homo sapiens | ENSG00000112378 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028340 | 1 retrocopy |
retro_ggor_1165 ,
|
Macropus eugenii | ENSMEUG00000004872 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000013979 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001473 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000997 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014930 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004238 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011669 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017043 | 3 retrocopies |