RetrogeneDB ID: | retro_meug_845 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold20679:3087..3669(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PERP | ||
Ensembl ID: | ENSMEUG00000004872 | ||
Aliases: | None | ||
Description: | PERP, TP53 apoptosis effector [Source:HGNC Symbol;Acc:17637] |
Percent Identity: | 70.62 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 0 |
Parental | MLRCGLDCERCRWILPLLLLSAIVFDIIALTGRGWLESENKSQTSSLWWKCPNEVGPSGTGSFDEGCETL |
ML.CGLD...C.WILPLL.L..IVFDII.L.G.GWL.SENKSQTS.L..K..NEV.PS...SF.E.CETL | |
Retrocopy | MLYCGLDR**CWWILPLLPLTTIVFDIISLAGQGWLKSENKSQTSFLR*KYLNEVCPSCSDSFEESCETL |
Parental | MHYAWGRAAAAMLMCGCIILVICFILSFFALCGPQMLVFLRVIGGLLALAAVFQIISLVIYPVMYTRQFL |
M...WGRAAAAMLMC.CIILVICFILSF.ALC.PQMLVFL.VI..LLALA..F.I.SLVIYPVMYT.QFL | |
Retrocopy | MSCVWGRAAAAMLMCPCIILVICFILSFLALCEPQMLVFL*VIARLLALANMF*ITSLVIYPVMYTPQFL |
Parental | QGDIVTRYYYNWAYGFGWAATIILIGCSFFFCCLPNYEDDLLGNAKPRYFYTSS |
QGD.V.R.YY..A.GFGW.ATIIL.G.....CCLPN.EDDL.GN.K.RY...SS | |
Retrocopy | QGDRVIRCYYSLACGFGWEATIILMG*TSSCCCLPNDEDDLPGNVKSRYL*SSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020097 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000019024 | 1 retrocopy | |
Homo sapiens | ENSG00000112378 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028340 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004872 | 1 retrocopy |
retro_meug_845 ,
|
Microcebus murinus | ENSMICG00000013979 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001473 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000997 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014930 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004238 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011669 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017043 | 3 retrocopies |