RetrogeneDB ID:

retro_meug_845

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold20679:3087..3669(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PERP
Ensembl ID:ENSMEUG00000004872
Aliases:None
Description:PERP, TP53 apoptosis effector [Source:HGNC Symbol;Acc:17637]


Retrocopy-Parental alignment summary:






>retro_meug_845
ATGCTGTACTGTGGCCTGGACCGTTAGTAATGCTGGTGGATCCTGCCCCTGCTTCCATTAACAACCATAGTCTTTGACAT
TATATCTCTGGCTGGTCAAGGCTGGTTGAAATCAGAGAACAAATCTCAGACATCCTTCCTGAGGTAGAAATACCTTAATG
AGGTTTGCCCTAGTTGTTCTGATTCCTTTGAAGAAAGCTGTGAGACCCTTATGAGCTGTGTCTGGGGAAGAGCAGCAGCT
GCCATGCTAATGTGTCCCTGCATCATTCTGGTTATATGCTTCATCCTCTCCTTCTTAGCTCTTTGTGAACCACAAATGCT
CGTTTTCCTGTGAGTGATTGCGAGACTGTTGGCCCTTGCTAATATGTTTTAGATCACCTCTCTGGTTATTTATCCAGTGA
TGTACACTCCCCAGTTCCTTCAAGGTGATCGGGTTATCAGGTGTTATTACAGCTTGGCCTGTGGCTTTGGCTGGGAAGCT
ACAATTATCCTCATGGGCTGAACTTCCTCCTGCTGCTGCCTCCCCAACGATGAAGATGATCTGCCGGGCAATGTTAAATC
TAGGTATTTGTAATCTTCATCC

ORF - retro_meug_845 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.62 %
Parental protein coverage: 100. %
Number of stop codons detected: 7
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMLRCGLDCERCRWILPLLLLSAIVFDIIALTGRGWLESENKSQTSSLWWKCPNEVGPSGTGSFDEGCETL
ML.CGLD...C.WILPLL.L..IVFDII.L.G.GWL.SENKSQTS.L..K..NEV.PS...SF.E.CETL
RetrocopyMLYCGLDR**CWWILPLLPLTTIVFDIISLAGQGWLKSENKSQTSFLR*KYLNEVCPSCSDSFEESCETL
ParentalMHYAWGRAAAAMLMCGCIILVICFILSFFALCGPQMLVFLRVIGGLLALAAVFQIISLVIYPVMYTRQFL
M...WGRAAAAMLMC.CIILVICFILSF.ALC.PQMLVFL.VI..LLALA..F.I.SLVIYPVMYT.QFL
RetrocopyMSCVWGRAAAAMLMCPCIILVICFILSFLALCEPQMLVFL*VIARLLALANMF*ITSLVIYPVMYTPQFL
ParentalQGDIVTRYYYNWAYGFGWAATIILIGCSFFFCCLPNYEDDLLGNAKPRYFYTSS
QGD.V.R.YY..A.GFGW.ATIIL.G.....CCLPN.EDDL.GN.K.RY...SS
RetrocopyQGDRVIRCYYSLACGFGWEATIILMG*TSSCCCLPNDEDDLPGNVKSRYL*SSS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_845 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_845 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 16 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000200971 retrocopy
Callithrix jacchus ENSCJAG000000190241 retrocopy
Homo sapiens ENSG000001123782 retrocopies
Gorilla gorilla ENSGGOG000000283401 retrocopy
Macropus eugenii ENSMEUG00000004872 1 retrocopy
retro_meug_845 ,
Microcebus murinus ENSMICG000000139791 retrocopy
Myotis lucifugus ENSMLUG000000014731 retrocopy
Macaca mulatta ENSMMUG000000009971 retrocopy
Nomascus leucogenys ENSNLEG000000149302 retrocopies
Oryctolagus cuniculus ENSOCUG000000042381 retrocopy
Otolemur garnettii ENSOGAG000000116691 retrocopy
Pongo abelii ENSPPYG000000170433 retrocopies



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