RetrogeneDB ID: | retro_ggor_326 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:180217897..180218346(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000024739 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL1 | ||
Ensembl ID: | ENSGGOG00000023183 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.03 % |
Parental protein coverage: | 90.36 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | NDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVK--MLPDKDCRYA |
.D.K..KSST.EEVK..KK.VLFCLS.D..NII.EEG...L.G.VGQ.VD..Y...VK..MLP.KDC.Y. | |
Retrocopy | DDKKEHKSSTAEEVKTHKKVVLFCLSGDE-NIIVEEGRGTLAGEVGQVVDNSYTMVVKVKMLPAKDCHYV |
Parental | LYDATYETKESKKEDLVFIFWAPESAPL-KSKMIYASSKDAIKKKLTGIKHELQANCY-EEVKDRCTLAE |
L.DATYETK.S..EDLVFIF.AP.SAPL.KS.MIY.SSKD.IKKKLTGI..EL.AN.Y..EVK..CT... | |
Retrocopy | LCDATYETKGSQEEDLVFIF*APQSAPL<KSRMIYGSSKDTIKKKLTGILRELLANGY<QEVKNLCTQVD |
Parental | KLG-GSAVIS-LEGKP |
KLG.GS.VIS.L.GKP | |
Retrocopy | KLG<GSTVIS<LQGKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 341 .62 RPM |
SRP007412_cerebellum | 0 .04 RPM | 220 .08 RPM |
SRP007412_heart | 0 .03 RPM | 59 .10 RPM |
SRP007412_kidney | 0 .08 RPM | 223 .42 RPM |
SRP007412_liver | 0 .00 RPM | 154 .87 RPM |
SRP007412_testis | 0 .00 RPM | 125 .36 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_287 |
Pan troglodytes | retro_ptro_236 |
Pongo abelii | retro_pabe_386 |
Macaca mulatta | retro_mmul_556 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017334 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000024955 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000001916 | 1 retrocopy | |
Equus caballus | ENSECAG00000019900 | 1 retrocopy | |
Felis catus | ENSFCAG00000013272 | 3 retrocopies | |
Homo sapiens | ENSG00000172757 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000009007 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000023183 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000024685 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000019016 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000011502 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005852 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000025604 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000016503 | 8 retrocopies | |
Pongo abelii | ENSPPYG00000003047 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000003895 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000020660 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000027968 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000016931 | 2 retrocopies |