RetrogeneDB ID: | retro_hsap_3769 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 7:104885098..104885414(+) | ||
Located in intron of: | ENSG00000135250 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000213361 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL36 | ||
Ensembl ID: | ENSG00000130255 | ||
Aliases: | RPL36, L36 | ||
Description: | ribosomal protein L36 [Source:HGNC Symbol;Acc:13631] |
Percent Identity: | 86.79 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELL-KVSKDKRA |
.ALRYPMAVGLNKG.KVTKNVS.PRHSRRRGRLTKHTKFVRDMI.E.CGFAPY...A.ELL.KVSKDKR. | |
Retrocopy | LALRYPMAVGLNKGQKVTKNVSEPRHSRRRGRLTKHTKFVRDMIPEACGFAPYKQHAKELL>KVSKDKRV |
Parental | LKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAKKD |
LKFIKKRV..HIRAKRKREE.SNVLAAMRKAAAKKD | |
Retrocopy | LKFIKKRVWAHIRAKRKREEQSNVLAAMRKAAAKKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 87 .64 RPM |
bodymap2_adrenal | 0 .06 RPM | 135 .08 RPM |
bodymap2_brain | 0 .07 RPM | 23 .58 RPM |
bodymap2_breast | 0 .02 RPM | 63 .97 RPM |
bodymap2_colon | 0 .00 RPM | 125 .47 RPM |
bodymap2_heart | 0 .00 RPM | 31 .81 RPM |
bodymap2_kidney | 0 .00 RPM | 62 .37 RPM |
bodymap2_liver | 0 .00 RPM | 51 .52 RPM |
bodymap2_lung | 0 .00 RPM | 172 .15 RPM |
bodymap2_lymph_node | 0 .00 RPM | 192 .06 RPM |
bodymap2_ovary | 0 .02 RPM | 141 .07 RPM |
bodymap2_prostate | 0 .00 RPM | 175 .83 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 119 .46 RPM |
bodymap2_testis | 0 .06 RPM | 53 .73 RPM |
bodymap2_thyroid | 0 .00 RPM | 45 .29 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 177 .56 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2555 |
Gorilla gorilla | retro_ggor_2535 |
Pongo abelii | retro_pabe_3081 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012349 | 6 retrocopies | |
Bos taurus | ENSBTAG00000001794 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000017072 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000005163 | 8 retrocopies | |
Felis catus | ENSFCAG00000011838 | 5 retrocopies | |
Homo sapiens | ENSG00000130255 | 13 retrocopies | |
Gorilla gorilla | ENSGGOG00000015365 | 11 retrocopies | |
Latimeria chalumnae | ENSLACG00000015161 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002743 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000001275 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000006166 | 6 retrocopies | |
Mus musculus | ENSMUSG00000057863 | 9 retrocopies | |
Otolemur garnettii | ENSOGAG00000027049 | 12 retrocopies | |
Pongo abelii | ENSPPYG00000009431 | 12 retrocopies | |
Rattus norvegicus | ENSRNOG00000033473 | 5 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000013492 | 8 retrocopies | |
Sus scrofa | ENSSSCG00000030010 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000020518 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |