RetrogeneDB ID: | retro_hsap_50 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | X:73524101..73524602(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000187969 | |
Aliases: | ZCCHC13, CNBP2, ZNF9L | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNBP | ||
Ensembl ID: | ENSG00000169714 | ||
Aliases: | CNBP, CNBP1, DM2, PROMM, RNF163, ZCCHC22, ZNF9 | ||
Description: | CCHC-type zinc finger, nucleic acid binding protein [Source:HGNC Symbol;Acc:13164] |
Percent Identity: | 68.28 % |
Parental protein coverage: | 85.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNC |
MSS...F.CG.SGHWAR.CP.GG..GR.....GRG.Q..S..L...CY.CGESG..AK.C.L....CYNC | |
Retrocopy | MSSKDFFACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLLGNICYNC |
Parental | GRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVA |
GR.GHIAKDCK.PKRER.Q.CY.CG..GHLARDCD...EQKCYSCG..GHIQKDC..VKCYRCGE.GHVA | |
Retrocopy | GRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVA |
Parental | INCSK |
INCSK | |
Retrocopy | INCSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 341 .52 RPM |
bodymap2_adrenal | 0 .00 RPM | 419 .42 RPM |
bodymap2_brain | 0 .00 RPM | 307 .18 RPM |
bodymap2_breast | 0 .00 RPM | 305 .86 RPM |
bodymap2_colon | 0 .00 RPM | 486 .35 RPM |
bodymap2_heart | 0 .00 RPM | 390 .77 RPM |
bodymap2_kidney | 0 .00 RPM | 225 .13 RPM |
bodymap2_liver | 0 .00 RPM | 210 .60 RPM |
bodymap2_lung | 0 .00 RPM | 606 .40 RPM |
bodymap2_lymph_node | 0 .00 RPM | 353 .87 RPM |
bodymap2_ovary | 0 .00 RPM | 413 .37 RPM |
bodymap2_prostate | 0 .00 RPM | 608 .89 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 778 .15 RPM |
bodymap2_testis | 4 .94 RPM | 379 .46 RPM |
bodymap2_thyroid | 0 .00 RPM | 497 .30 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 495 .78 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_201196 | 1825 libraries | 1 library | 1 library | 2 libraries | 0 libraries |
TSS #2 | TSS_201197 | 1824 libraries | 2 libraries | 1 library | 2 libraries | 0 libraries |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_3658 |
Equus caballus | retro_ecab_1072 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |