RetrogeneDB ID: | retro_cfam_23 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:57603524..57603962(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000032517 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNBP | ||
Ensembl ID: | ENSCAFG00000004320 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris CCHC-type zinc finger, nucleic acid binding protein (CNBP), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001252264] |
Percent Identity: | 78.23 % |
Parental protein coverage: | 69.27 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCC |
SRGRG.....RG....S..LPDICYRCG.SGH.AK.CDL.ED...CYNCGR.GHIAKDC.EPKREREQCC | |
Retrocopy | SRGRGARGRGRGSPCSSTNLPDICYRCGKSGHHAKNCDLLEDI--CYNCGRSGHIAKDCIEPKREREQCC |
Parental | YNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSK |
Y.CG.PGHLARDCD...EQKCYSCGE.GHIQKDCT.VKCYRCGETGHVAINCSK | |
Retrocopy | YTCGRPGHLARDCDRQEEQKCYSCGEYGHIQKDCTQVKCYRCGETGHVAINCSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 281 .52 RPM |
SRP017611_brain | 0 .00 RPM | 156 .16 RPM |
SRP017611_kidney | 0 .00 RPM | 330 .52 RPM |
SRP017611_liver | 0 .00 RPM | 100 .29 RPM |