RetrogeneDB ID: | retro_rnor_207 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:75298570..75299083(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000002923 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cnbp | ||
Ensembl ID: | ENSRNOG00000010239 | ||
Aliases: | Cnbp, Cnbp1, Znf9 | ||
Description: | Cellular nucleic acid-binding protein [Source:UniProtKB/Swiss-Prot;Acc:P62634] |
Percent Identity: | 74.15 % |
Parental protein coverage: | 83.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYN |
.RGR......RG.Q..S.S..D.CYRCGE.GH.AKDCDL..D.CYNCGR.GHIAKDC...KREREQCCY. | |
Retrocopy | TRGRTTRGRTRGPQCSSASQSDVCYRCGETGHYAKDCDLLQDTCYNCGRRGHIAKDCTQAKREREQCCYI |
Parental | CGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARE |
C..PGHLARDCD...EQKCY.CGEFGHIQKDCT..KCYRCGE.GH.A.NCSK.SEV.CYRCGESGHLARE | |
Retrocopy | CSRPGHLARDCDRQEEQKCYTCGEFGHIQKDCTQIKCYRCGENGHMAVNCSKASEVSCYRCGESGHLARE |
Parental | CTIEATA |
C.IEATA | |
Retrocopy | CPIEATA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 185 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 199 .51 RPM |
SRP017611_liver | 0 .00 RPM | 176 .23 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_230 |