RetrogeneDB ID: | retro_pabe_3658 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:71787545..71787980(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000020478 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNBP | ||
Ensembl ID: | ENSPPYG00000013423 | ||
Aliases: | CNBP, ZNF9 | ||
Description: | Cellular nucleic acid-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q5R5R5] |
Percent Identity: | 71.03 % |
Parental protein coverage: | 81.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCG |
GRGG....RG.Q..S..L...CY.CGES...AK.C.L....CYNCGR.GHIAKDCKEPKRER.Q.CY.CG | |
Retrocopy | GRGGGGHGRGSQCGSTTLSYTCYCCGESSRHAKNCVLLGNICYNCGRSGHIAKDCKEPKRERHQHCYTCG |
Parental | KPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT |
..GHLARDCD...EQKCYSCG..GHIQKDC..VKCYRCGE.GHVAINCSK.S.VNCYRCG.SGHLAREC. | |
Retrocopy | RLGHLARDCDRQKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSKASQVNCYRCGKSGHLARECP |
Parental | IEATA |
.E.TA | |
Retrocopy | SEVTA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 126 .01 RPM |
SRP007412_cerebellum | 0 .00 RPM | 197 .85 RPM |
SRP007412_heart | 0 .00 RPM | 221 .80 RPM |
SRP007412_kidney | 0 .00 RPM | 146 .18 RPM |
SRP007412_liver | 0 .00 RPM | 174 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_50 |
Equus caballus | retro_ecab_1072 |