RetrogeneDB ID: | retro_ggor_2926 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | X:71448090..71448526(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000008056 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNBP | ||
Ensembl ID: | ENSGGOG00000010085 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.54 % |
Parental protein coverage: | 82.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYN |
GR.G....RG.Q..S..L...CY.CGESG..AK...L......CYNCGR.GHIAKDCKEPKRER.Q.CY. | |
Retrocopy | GRRGGGHGRGSQCGSTTLSYTCYCCGESGRHAKNFVLLGNI--CYNCGRSGHIAKDCKEPKRERRQHCYT |
Parental | CGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKT-SEVNCYRCGESGHLAR |
CG..GHLARDCD...EQKCYSCG..GHIQKD...VK.YRCGE.GHVAINCSK....VNCYR.G.SGHLA. | |
Retrocopy | CGRLGHLARDCDRQKEQKCYSCGKLGHIQKDYAQVKRYRCGEIGHVAINCSKA>GQVNCYR*GKSGHLAK |
Parental | ECTIEATA |
EC..E.TA | |
Retrocopy | ECPSEVTA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 149 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 176 .86 RPM |
SRP007412_heart | 0 .00 RPM | 102 .03 RPM |
SRP007412_kidney | 0 .00 RPM | 187 .56 RPM |
SRP007412_liver | 0 .00 RPM | 186 .02 RPM |
SRP007412_testis | 0 .00 RPM | 211 .55 RPM |