RetrogeneDB ID: | retro_itri_1549 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393537.1:310441..310997(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E | ||
Ensembl ID: | ENSSTOG00000002230 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4E [Source:HGNC Symbol;Acc:3287] |
Percent Identity: | 75. % |
Parental protein coverage: | 85.25 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MATVEPETTPTPNPPPTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVE |
M.TVE.ETTPT.NP...E.EKT.S.QE.ANPEHY.KHPLQNRWA.WF.KNDKSKTWQANL..IS.FDTVE | |
Retrocopy | MVTVEMETTPTANPLTSEKEKTDSHQEIANPEHYVKHPLQNRWAFWFLKNDKSKTWQANLLPISRFDTVE |
Parental | DFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDE-KNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIG |
DF..LY.H..LSSNLMPGC.YS.FKDG.EP.WED..KNK.G.RWL.TLNKQ.R.SDLD...LETLLCLI. | |
Retrocopy | DFGVLYSHS*LSSNLMPGCYYSNFKDGFEPVWEDK>KNKWGERWLMTLNKQ*R*SDLDHSYLETLLCLIV |
Parental | E-SFDDYSDDVCGAVVNVRAKGDKIAIWT-TECENREAVTHIGRVYKE |
..SFD..SDDVCGAVV.VRAK.DK.AIWT.TECE.REAVTHIGRV.K. | |
Retrocopy | D<SFDHHSDDVCGAVVHVRAKDDKTAIWT>TECEYREAVTHIGRVFKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |