RetrogeneDB ID: | retro_itri_1819 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393892.1:180448..180871(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E | ||
Ensembl ID: | ENSSTOG00000002230 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4E [Source:HGNC Symbol;Acc:3287] |
Percent Identity: | 76.92 % |
Parental protein coverage: | 64.98 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | LWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNK-RGGRW |
L.F.KN..SKTWQANL.LIS.FDTVEDF.ALY.H..LSS.LMPGCDYS.FKDG..P.WEDEKNK..GGR. | |
Retrocopy | LVFLKNETSKTWQANLLLISRFDTVEDFGALYSHS*LSSYLMPGCDYSNFKDGF*PVWEDEKNK<IGGRC |
Parental | LITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWT-TECENREAVTHIGRV |
L.TLNKQ.R.SDLD.F.LETLLCLIGESFDD.SDDVCGAV..VRAKGD..A.WT..E.ENREA.THIGRV | |
Retrocopy | LMTLNKQKR*SDLDHFCLETLLCLIGESFDDHSDDVCGAVFHVRAKGD*TATWT>IEWENREAFTHIGRV |
Parental | YKE |
YKE | |
Retrocopy | YKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |