RetrogeneDB ID: | retro_mdom_1399 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 4:280135202..280135835(-) | ||
Located in intron of: | ENSMODG00000004979 | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000024204 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB5C | ||
Ensembl ID: | ENSMODG00000014792 | ||
Aliases: | None | ||
Description: | RAB5C, member RAS oncogene family [Source:HGNC Symbol;Acc:9785] |
Percent Identity: | 74.41 % |
Parental protein coverage: | 81.47 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | GAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW |
G.AR.N.......ICQFKLVLLGES.VGKSSLVL.FVKGQFH.YQEST.GA.FLTQ.V.LDDTTVKFEIW | |
Retrocopy | GTARSNSHLQTSNICQFKLVLLGESTVGKSSLVLCFVKGQFH*YQESTFGATFLTQSVYLDDTTVKFEIW |
Parental | DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLGSKRAVD |
D.AGQE.YHS..PMYYRGAQAAIVVYDITN..TFA.AK.WVKELQ.QASP.IVIALAGNKADL..K..V. | |
Retrocopy | DSAGQEQYHS*VPMYYRGAQAAIVVYDITNQETFA*AKTWVKELQ*QASPSIVIALAGNKADLANKHMVE |
Parental | FQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAPGAPGRNRGVDLQENSPTSRSQCCS |
..E.QAYA.DNSLLF.ETS.KTAMNVN..F.AIAKKLPK.EPQ...G..G..RGVDL.E.S....SQCCS | |
Retrocopy | YEEVQAYADDNSLLFIETSVKTAMNVNDFFLAIAKKLPKSEPQSMGGTAG*SRGVDLHEQSQQNKSQCCS |
Parental | N |
N | |
Retrocopy | N |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006003 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000472 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000011190 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000006819 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005472 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005614 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014761 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014792 | 1 retrocopy |
retro_mdom_1399 ,
|
Monodelphis domestica | ENSMODG00000014793 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000021443 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000009456 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008398 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009194 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018568 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000007092 | 1 retrocopy |