RetrogeneDB ID: | retro_pabe_2664 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:92010674..92011233(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB5C | ||
Ensembl ID: | ENSPPYG00000008398 | ||
Aliases: | None | ||
Description: | Ras-related protein Rab-5C [Source:UniProtKB/Swiss-Prot;Acc:Q5R7L7] |
Percent Identity: | 79.58 % |
Parental protein coverage: | 86.57 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | SAVGKSSL-VLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFE-IWDTAGQERYHSLAPMY-YRGAQA |
SAVGKSSL.VL..VKGQFH.Y.ESTI.AAFL.Q.VCLD.TTV.FE.IWDT.GQE.YHSLAPMY..RGAQA | |
Retrocopy | SAVGKSSL<VLCLVKGQFHAY*ESTIRAAFLIQNVCLDNTTVRFE<IWDTVGQEWYHSLAPMY>LRGAQA |
Parental | AIVVYDITNTDTFARAKNWVKEL-QRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSA |
AIVVYDITNTDTFA.AKN.VKEL...QA.PN.V.AL.GNKADLASKR..EFQEAQAYADD.S.LFMETSA | |
Retrocopy | AIVVYDITNTDTFAGAKN*VKEL<TEQATPNMVLALTGNKADLASKRPLEFQEAQAYADDDSWLFMETSA |
Parental | KTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN |
K.AMNVNEIFM.IA.KLPKN.PQNA.GAP.RN.GVDLQEN..AS..QCCSN | |
Retrocopy | KAAMNVNEIFMSIAEKLPKNKPQNAAGAPDRNQGVDLQENHLASPNQCCSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 81 .55 RPM |
SRP007412_cerebellum | 0 .12 RPM | 36 .72 RPM |
SRP007412_heart | 0 .03 RPM | 18 .51 RPM |
SRP007412_kidney | 0 .03 RPM | 137 .82 RPM |
SRP007412_liver | 0 .09 RPM | 52 .73 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3216 |
Pan troglodytes | retro_ptro_2237 |
Macaca mulatta | retro_mmul_2022 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006003 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000472 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000011190 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000006819 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005472 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005614 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014761 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014792 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009456 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008398 | 1 retrocopy |
retro_pabe_2664 ,
|
Pongo abelii | ENSPPYG00000014074 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000009194 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018568 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000007092 | 1 retrocopy |