RetrogeneDB ID: | retro_mmul_2022 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 6:87714085..87714646(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000007275 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4793 | ||
Ensembl ID: | ENSMMUG00000014761 | ||
Aliases: | RAB5C, RAB5L | ||
Description: | ras-related protein Rab-5C [Source:RefSeq peptide;Acc:NP_001253100] |
Percent Identity: | 80.95 % |
Parental protein coverage: | 86.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | SAVGKSSL-VLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI |
SAVGKS.L.VL..VKGQFHEYQESTIGAAFLTQ.VCLD.TTV.FEIWD..GQE.YHSLA.MY...AQAAI | |
Retrocopy | SAVGKSNL<VLCLVKGQFHEYQESTIGAAFLTQNVCLDNTTVRFEIWDMVGQEWYHSLAAMYSWEAQAAI |
Parental | VVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTA |
.VYD.TNTDTFA..KNWVKEL.RQASPN.V.AL.GNKADLASK.A.EFQEAQAY.D.NS.LFMETSAK.A | |
Retrocopy | MVYDVTNTDTFAGDKNWVKELSRQASPNMVLALTGNKADLASKKALEFQEAQAYTDNNSWLFMETSAKAA |
Parental | MNVNEIFMAIAKKLPKNEPQNATGAPGRNRGV-DLQENNPASRSQCCSN |
MNVNEIFMAIA.KLPKN.PQNA.GAP.RN.GV.DLQEN.PAS.SQCCSN | |
Retrocopy | MNVNEIFMAIAEKLPKNKPQNAAGAPDRNQGV>DLQENQPASPSQCCSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 47 .96 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 108 .84 RPM |
SRP007412_cerebellum | 0 .00 RPM | 40 .10 RPM |
SRP007412_heart | 0 .00 RPM | 32 .80 RPM |
SRP007412_kidney | 0 .00 RPM | 101 .76 RPM |
SRP007412_liver | 0 .00 RPM | 80 .00 RPM |
SRP007412_testis | 0 .00 RPM | 43 .69 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3216 |
Pan troglodytes | retro_ptro_2237 |
Pongo abelii | retro_pabe_2664 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000000472 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000005472 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005614 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000005692 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006992 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000014761 | 1 retrocopy |
retro_mmul_2022 ,
|
Monodelphis domestica | ENSMODG00000014792 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008398 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009194 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007092 | 1 retrocopy |