RetrogeneDB ID: | retro_mdom_1615 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 6:173983503..173983803(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS25 | ||
Ensembl ID: | ENSMODG00000013334 | ||
Aliases: | None | ||
Description: | ribosomal protein S25 [Source:HGNC Symbol;Acc:10413] |
Percent Identity: | 54.81 % |
Parental protein coverage: | 83.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KKKDAGKSAKKDKDPVNKSGGKAKKKVKAIWGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSER |
KK.DAGK.AKK.KD..N....K.KKK.....G.V..K.NNL....K.......KE..N.KLI..A.VSER | |
Retrocopy | KKSDAGKLAKKNKDHTNNYEDKVKKKWSK--GQVQHKFNNLFVGTKQ-HENIFKEILNSKLISLARVSER |
Parental | LKIRGSLARAALQELLSKGLIKLVSKHRAQVIYT |
LKI..SL..AA.Q.LLSKGLI..VSK.RA..IYT | |
Retrocopy | LKI*SSLSWAAFQKLLSKGLIN-VSKQRAKSIYT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000051 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000012395 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000013298 | 2 retrocopies | |
Felis catus | ENSFCAG00000001151 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000017117 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000002687 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000004752 | 15 retrocopies | |
Monodelphis domestica | ENSMODG00000013334 | 2 retrocopies |
retro_mdom_1267, retro_mdom_1615 ,
|
Mustela putorius furo | ENSMPUG00000004960 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000015103 | 12 retrocopies |