Parental gene:

ENSCAFG00000012395

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:5:14834172..14836232(+)


>ENSCAFG00000012395
CAGCCGCCCAAGGACGACAAGAAGAAGAAAGATGCCGGAAAGTCGGCCAAGAAGGACAAAGACCCAGTGAACAAGTCTGG
AGGCAAGGCCAAAAAGAAGAAGTGGTCCAAAGGCAAAGTTCGAGACAAGCTCAATAATCTGGTGTTGTTTGACAAAGCGA
CATATGACAAACTCTGTAAGGAGGTTCCCAACTATAAGCTTATAACTCCAGCTGTTGTCTCTGAGAGACTGAAGATTCGA
GGTTCTCTGGCCAGGGCAGCCCTTCAGGAGCTCCTCAGTAAAGGACTTATTAAACTGGTTTCAAAGCACAGAGCTCAAGT
AATTTACACCAGAAACACCAAGGGTGGAGATGCCCCAGCTGCCGGTGAAGATGCATGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 259 .09 RPM
SRP017611_brain 78 .28 RPM
SRP017611_kidney 747 .08 RPM
SRP017611_liver 187 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000051 ortholog_one2one 5 retrogenes
retro_amel_1654, retro_amel_1765, retro_amel_574, retro_amel_60, retro_amel_684,
Cavia porcellus ENSCPOG00000013298 ortholog_one2one 2 retrogenes
retro_cpor_705, retro_cpor_9,
Felis catus ENSFCAG00000001151 ortholog_one2one 3 retrogenes
retro_fcat_1792, retro_fcat_601, retro_fcat_903,
Latimeria chalumnae ENSLACG00000017531 possible_ortholog 4 retrogenes
retro_lcha_101, retro_lcha_118, retro_lcha_50, retro_lcha_72,
Loxodonta africana ENSLAFG00000017117 ortholog_one2one 6 retrogenes
retro_lafr_1074, retro_lafr_270, retro_lafr_387, retro_lafr_431, retro_lafr_478, retro_lafr_90,
Macropus eugenii ENSMEUG00000014185 possible_ortholog 3 retrogenes
retro_meug_1181, retro_meug_1562, retro_meug_174,
Microcebus murinus ENSMICG00000002687 possible_ortholog 8 retrogenes
retro_mmur_1023, retro_mmur_1514, retro_mmur_229, retro_mmur_308, retro_mmur_387, retro_mmur_425, retro_mmur_485, retro_mmur_688,
Myotis lucifugus ENSMLUG00000004752 ortholog_one2one 15 retrogenes
retro_mluc_1166, retro_mluc_1482, retro_mluc_1514, retro_mluc_1541, retro_mluc_1665, retro_mluc_1762, retro_mluc_1794, retro_mluc_1947, retro_mluc_2030, retro_mluc_2394, retro_mluc_467, retro_mluc_523, retro_mluc_649, retro_mluc_669, retro_mluc_903,
Macaca mulatta ENSMMUG00000016894 possible_ortholog 2 retrogenes
retro_mmul_137, retro_mmul_71,
Monodelphis domestica ENSMODG00000013334 ortholog_one2one 2 retrogenes
retro_mdom_1267, retro_mdom_1615,
Mustela putorius furo ENSMPUG00000004960 ortholog_one2one 4 retrogenes
retro_mputfur_1288, retro_mputfur_372, retro_mputfur_525, retro_mputfur_671,
Ochotona princeps ENSOPRG00000016194 possible_ortholog 9 retrogenes
retro_opri_1099, retro_opri_1204, retro_opri_256, retro_opri_320, retro_opri_393, retro_opri_493, retro_opri_64, retro_opri_854, retro_opri_873,
Sus scrofa ENSSSCG00000015103 ortholog_one2one 12 retrogenes
retro_sscr_1020, retro_sscr_1034, retro_sscr_1035, retro_sscr_1055, retro_sscr_1079, retro_sscr_1107, retro_sscr_1172, retro_sscr_223, retro_sscr_368, retro_sscr_594, retro_sscr_717, retro_sscr_930,
Ictidomys tridecemlineatus ENSSTOG00000020783 possible_ortholog 3 retrogenes
retro_itri_1491, retro_itri_196, retro_itri_87,
Vicugna pacos ENSVPAG00000000266 possible_ortholog 4 retrogenes
retro_vpac_106, retro_vpac_118, retro_vpac_337, retro_vpac_546,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_500 89.60 99.20
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cfam_680 75.70 84.80
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_cfam_984 89.60 99.20
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCAFG00000012395 retrocopies