RetrogeneDB ID: | retro_lafr_387 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_14:32859187..32859510(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSLAFG00000017117 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.68 % |
Parental protein coverage: | 87.3 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KKDKDPVNKSGGKAKKKQKWSKG-KVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLA |
KKDK.PV.KSG.K.KKK..WSK..K..DK.NNLVLF.KATY.K.CKEV.NYKLITPA.V.ERLKI.GS.. | |
Retrocopy | KKDKNPVKKSGVKTKKK--WSKA<KL*DKFNNLVLFGKATYNKFCKEVSNYKLITPAMVCERLKIHGSPT |
Parental | RAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA |
.AALQELL.KGLIKLVSKHRAQVIYTRNT...D..AAGEDA | |
Retrocopy | TAALQELLNKGLIKLVSKHRAQVIYTRNTRDEDVSAAGEDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000051 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000012395 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000013298 | 2 retrocopies | |
Felis catus | ENSFCAG00000001151 | 3 retrocopies | |
Latimeria chalumnae | ENSLACG00000017531 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000017117 | 6 retrocopies | |
Macropus eugenii | ENSMEUG00000014185 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000002687 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000004752 | 15 retrocopies | |
Monodelphis domestica | ENSMODG00000013334 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000004960 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000016194 | 9 retrocopies | |
Sus scrofa | ENSSSCG00000015103 | 12 retrocopies | |
Vicugna pacos | ENSVPAG00000000266 | 4 retrocopies |