RetrogeneDB ID:

retro_mmur_308

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_2320:229724..230093(-)
Located in intron of:ENSMICG00000016784
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMICG00000002687
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mmur_308
ATGCTGCCCAGGGACGACAAGAAGAAGAAAGATGCCGGAAAGTCGGCCAAGACAGACAAAGACCCAGTGAACAAATCTGG
GGGCAAGGCCCAAAAGAAGTGGTCCCAAGGCAAAGTTCGGGACAAGCTCAACAACTTAGTCTTGCTTAACAAAGCTACAT
ATGACAAACTCTGTCAGGAAGTTCCCAACTATAAGCTTATAACCCCAGCTGTGGTCTCTGAGAGACTGAGGATTCGAGGT
TCCCTGGCCAGGGCAGCCCTTCAGGAGCTCCTTAGTAAAGGCCTCATCAAGCTGGTTCCAAAGCACAGAGCTCAAGTAAT
TTACACCAGAAATACCAAGGGTAGAGATGCCCCAGCTGCTGGCGAAGAT

ORF - retro_mmur_308 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.52 %
Parental protein coverage: 99.2 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMPPKDDKKEKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITP
M.P.DDKK.KDAGKSAK.DKDPVNKSGGKA.KK.WS.GKVRDKLNNLVL..KATYDKLC.EVPNYKLITP
RetrocopyMLPRDDKKKKDAGKSAKTDKDPVNKSGGKAQKK-WSQGKVRDKLNNLVLLNKATYDKLCQEVPNYKLITP
ParentalAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGED
AVVSERL.IRGSLARAALQELLSKGLIKLV.KHRAQVIYTRNTKG.DAPAAGED
RetrocopyAVVSERLRIRGSLARAALQELLSKGLIKLVPKHRAQVIYTRNTKGRDAPAAGED

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_308 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_308 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 85 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000000515 retrocopies
Canis familiaris ENSCAFG000000123953 retrocopies
Cavia porcellus ENSCPOG000000132982 retrocopies
Felis catus ENSFCAG000000011513 retrocopies
Latimeria chalumnae ENSLACG000000175314 retrocopies
Loxodonta africana ENSLAFG000000171176 retrocopies
Macropus eugenii ENSMEUG000000141853 retrocopies
Microcebus murinus ENSMICG00000002687 8 retrocopies
Myotis lucifugus ENSMLUG0000000475215 retrocopies
Macaca mulatta ENSMMUG000000168942 retrocopies
Monodelphis domestica ENSMODG000000133342 retrocopies
Mustela putorius furoENSMPUG000000049604 retrocopies
Ochotona princeps ENSOPRG000000161949 retrocopies
Sus scrofa ENSSSCG0000001510312 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000207833 retrocopies
Vicugna pacos ENSVPAG000000002664 retrocopies



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