RetrogeneDB ID:

retro_mdom_61

Retrocopy
location
Organism:Opossum (Monodelphis domestica)
Coordinates:2:516078301..516078565(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMODG00000023171
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMODG00000000393
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mdom_61
ATGGCCCAGGTGGAATTTGAGTTGGCATGTGCAACAGTTAAGCAGCTAACCGGCCCTGTGAGTGACGAGGAGAAGCTGCT
AGTATACAGTTACTATAAACAGGCCACCGTAGGGGACATCAACATCCCTTGCCCAGAAGTCACCGACTTCAAAGCCAAAG
CCAAGTGGGAGGCTTGGAATTGCCGCAAAGGAATGTCTAAACTGGATGCCATGAGGATCTACGTGTCCAAAGTGGAAGAA
CTGAAGAAAAAACAAAGTTCTTAA

ORF - retro_mdom_61 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 58.75 %
Parental protein coverage: 95.24 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalEFDKAAAEVKVLKSKPNDDEMLYIYSHFKQATVGDVNTARPGITDFKGKAKWDAWNSLKGKSKEDAIKAY
EF..A.A.VK.L.....D.E.L..YS..KQATVGD.N...P..TDFK.KAKW.AWN..KG.SK.DA...Y
RetrocopyEFELACATVKQLTGPVSDEEKLLVYSYYKQATVGDINIPCPEVTDFKAKAKWEAWNCRKGMSKLDAMRIY
ParentalIEKVEELKKK
..KVEELKKK
RetrocopyVSKVEELKKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM 0 .00 RPM
SRP007412_heart 0 .00 RPM 0 .00 RPM
SRP007412_kidney 0 .00 RPM 0 .00 RPM
SRP007412_liver 0 .00 RPM 0 .00 RPM
SRP007412_testis 0 .00 RPM 0 .00 RPM
Monodelphis domestica was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mdom_61 retrocopy.
Monodelphis domestica was not studied using FANTOM5 data.
retro_mdom_61 was not experimentally validated.

Retrocopy orthology:
Monodelphis domestica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 27 parental genes, and 77 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000085093 retrocopies
Bos taurus ENSBTAG000000095172 retrocopies
Canis familiaris ENSCAFG000000048956 retrocopies
Callithrix jacchus ENSCJAG000000214361 retrocopy
Cavia porcellus ENSCPOG000000004152 retrocopies
Equus caballus ENSECAG000000189491 retrocopy
Erinaceus europaeus ENSEEUG000000121152 retrocopies
Echinops telfairi ENSETEG000000002205 retrocopies
Homo sapiens ENSG000001553683 retrocopies
Gorilla gorilla ENSGGOG000000103723 retrocopies
Loxodonta africana ENSLAFG000000050022 retrocopies
Microcebus murinus ENSMICG000000002942 retrocopies
Macaca mulatta ENSMMUG000000111263 retrocopies
Monodelphis domestica ENSMODG00000000393 1 retrocopy
retro_mdom_61 ,
Mustela putorius furoENSMPUG000000009452 retrocopies
Mus musculus ENSMUSG000000263852 retrocopies
Nomascus leucogenys ENSNLEG000000102902 retrocopies
Oryctolagus cuniculus ENSOCUG000000045661 retrocopy
Ochotona princeps ENSOPRG000000083633 retrocopies
Pongo abelii ENSPPYG000000127882 retrocopies
Pan troglodytes ENSPTRG000000124012 retrocopies
Pteropus vampyrus ENSPVAG000000143495 retrocopies
Rattus norvegicus ENSRNOG000000468893 retrocopies
Sus scrofa ENSSSCG000000234353 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000067591 retrocopy
Tupaia belangeri ENSTBEG0000000206713 retrocopies
Tarsius syrichta ENSTSYG000000021082 retrocopies



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