RetrogeneDB ID: | retro_cfam_1599 | ||
Retrocopy location | Organism: | Dog (Canis familiaris) | |
| Coordinates: | 36:10233222..10233492(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | DBI | ||
| Ensembl ID: | ENSCAFG00000004895 | ||
| Aliases: | DBI, ACBP, EP | ||
| Description: | Canis lupus familiaris diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) (DBI), mRNA. [Source:RefSeq mRNA;Acc:NM_001197047] |
Retrocopy-Parental alignment summary:
>retro_cfam_1599
CCCGCGGGCATGTCTGAGGCTGAGTTTGACAAAGTTGCTGAGGACTCTAAGCACCTCAAGACCAAGCCAGCAGACAATGA
GATGCCATTCACCTACAGTCATTATGAACAAGCAACTGTGGATGACACAAGCACAGAGCAGCCTGGGCTGCCAGATCTCA
AAGGCAAGGCCAAGTGGGAGGCCTGAAATCAGCTGAAAGGGATTTCCACCGAAGATGCCATGAAAGCTTACATCAACAAA
GCAGAAGATCTAAAGAAAGAGTATGGAATA
ORF - retro_cfam_1599 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 74.44 % |
| Parental protein coverage: | 65.69 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | PADRLEAEFDKAAEDVKHLKTKPADDEMLYIYSHYKQATVGDINTERPGLLDLRGKAKWDAWNQLKGTSK |
| PA...EAEFDK.AED.KHLKTKPAD.EM...YSHY.QATV.D..TE.PGL.DL.GKAKW.A.NQLKG.S. | |
| Retrocopy | PAGMSEAEFDKVAEDSKHLKTKPADNEMPFTYSHYEQATVDDTSTEQPGLPDLKGKAKWEA*NQLKGIST |
| Parental | EDAMKAYVNKVEDLKKKYGI |
| EDAMKAY.NK.EDLKK.YGI | |
| Retrocopy | EDAMKAYINKAEDLKKEYGI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012049_cerebellum | 0 .00 RPM | 333 .22 RPM |
| SRP017611_brain | 0 .00 RPM | 73 .28 RPM |
| SRP017611_kidney | 0 .00 RPM | 701 .51 RPM |
| SRP017611_liver | 0 .00 RPM | 196 .51 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_1599 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_1599 was not experimentally validated.