RetrogeneDB ID: | retro_meug_1032 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold26385:17105..17949(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBBP4 | ||
Ensembl ID: | ENSMEUG00000014379 | ||
Aliases: | None | ||
Description: | retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887] |
Percent Identity: | 87.23 % |
Parental protein coverage: | 66.12 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | DDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHP |
DDAQFDASHYDSEKGEFGGFGSVSGKIEI.I.INHEGEV.RA.YMP.NPCIIATKTPSS.VLVFDYTKHP | |
Retrocopy | DDAQFDASHYDSEKGEFGGFGSVSGKIEIKININHEGEVKRACYMPPNPCIIATKTPSSNVLVFDYTKHP |
Parental | SK-PDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHT |
SK.PDPS.EC.PDL.L.GH.KE.YGLSWNPNLSGHLLSA.DDHT.CLWD.SA.PKE.KVVDAKTIFTGHT | |
Retrocopy | SK>PDPSRECKPDLHLCGH*KEVYGLSWNPNLSGHLLSAPDDHTTCLWDVSAIPKECKVVDAKTIFTGHT |
Parental | AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT |
AVVEDVSW.L.HESL.GSVADDQKL..WDTRSNNTSKPS.SVDAH.A.V.CLSFNPYSEFILATG.ADKT | |
Retrocopy | AVVEDVSWNLPHESLSGSVADDQKLTMWDTRSNNTSKPSYSVDAHIAKVSCLSFNPYSEFILATG*ADKT |
Parental | VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELL |
VALWDLRNLKLKLHSFES.KDEIFQVQWSPHNETILASSGTD.RLNVWDL.KIG.EQS.EDAEDGP.ELL | |
Retrocopy | VALWDLRNLKLKLHSFESQKDEIFQVQWSPHNETILASSGTDHRLNVWDLNKIGKEQSLEDAEDGPSELL |
Parental | FI |
.. | |
Retrocopy | LV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |