RetrogeneDB ID: | retro_meug_1048 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold26976:13823..14372(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMEUG00000016459 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.59 % |
Parental protein coverage: | 78.48 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK |
MS.Y.RY.G...VYV.NL.TGAGKGELERAFSYYGPLRT.WIARNPP.F.FVEFEDPRD.ED....LDGK | |
Retrocopy | MSYYQRYEGDIQVYVDNLETGAGKGELERAFSYYGPLRTIWIARNPPRFPFVEFEDPRDSEDGIQPLDGK |
Parental | VICGSRVRVELSTGMPRRSRYDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRG |
VI..S.V.VELST..P.R...D.PPA..PF..NDR.YEC.EKGH.AYD.H.Y...R.SRS.SRSH...R. | |
Retrocopy | VIYSSNVKVELSTSLP*RFWHDKPPAYCPFSSNDRYYECCEKGHHAYDFHCYNQPRKSRSQSRSH*GRR- |
Parental | RRYSRSRSRSRGRRSRSASPRRSRSASLRRSRSASIRSRSGSLKRS |
..YS...SR..GRRSRS.SP.R.RS.SL..SR..SI.S..GSLK.S | |
Retrocopy | --YSCL*SRNCGRRSRSVSPQRPRSTSLCTSRYNSIQS**GSLKSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015988 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000029620 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007821 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000001521 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000016459 | 1 retrocopy |
retro_meug_1048 ,
|
Myotis lucifugus | ENSMLUG00000009536 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000008669 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024097 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010169 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000027360 | 11 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015970 | 1 retrocopy |